Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28624 634 8e-177 seq6 105 1e-17 >seq28624 Length=432676 Score = 634 bits (702), Expect = 8e-177 Identities = 1218/1782 (68%), Gaps = 24/1782 (1%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||| | ||||| ||||||| | || ||||| || || | ||| ||||| ||| Sbjct 59691 TTATCTACAGTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCA 59632 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| | ||||| |||| ||| |||||| || ||| | ||| ||| | || Sbjct 59631 GTTTTCAAACCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGC 59572 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || | ||||| || | ||| || ||||||||||| ||||| ||||| || || ||| Sbjct 59571 TCAGCAACGTGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCC 59512 Query 75548 ATTTTTATAATGGTCTTTTGAG-GA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGATAT 75605 || | || | || ||||| || || ||||| | |||||| | | | |||||| Sbjct 59511 ATCTGAATTGTAGT--TTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGATAT 59454 Query 75606 CATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTA---TTCT 75659 | | || | | || ||||||||||||| ||||| | |||| || |||| Sbjct 59453 CTTTCGGTATACTTTCAATATTTTGAATGGA---GCCATTATTGTGAATTATAAGATTCT 59397 Query 75660 TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 | || || |||| ||||| | || || ||| ||| ||| ||||| |||| || | Sbjct 59396 TCATATCGTCATCCCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGA 59337 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 || ||||| ||||| || ||||| || || ||||| || | || || | | Sbjct 59336 CCTGGAATTCGCCAGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGG 59277 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 | |||||||| || | |||||| ||||| ||||| || ||||| || || | || | Sbjct 59276 ACTCATTGTTACCAAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCG 59217 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 |||||| | ||| ||| || ||||| ||||| ||| | |||| | ||| || || | Sbjct 59216 AATTTCTTAAACCGTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCG 59157 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 ||| ||||| | ||| ||||| | ||| || || || ||| || | || Sbjct 59156 TTGGCGTTTTCTCCCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTACCTTCAT 59097 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 ||| ||| | || | |||||||||| ||| || || || ||||| || || |||| Sbjct 59096 ATGAACTGTATGGGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAAT 59037 Query 76020 AAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAAT 76079 |||| || || ||||| | | ||||| | |||| ||| ||| | || || | Sbjct 59036 AAATAGTCTCAAAAATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATT 58978 Query 76080 GTAAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | | || ||| ||||| |||| ||| ||||| |||||||||||||||||||||||| Sbjct 58977 CTCATTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTC 58918 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 |||||||| ||| ||||| || | |||||||||||||| || || |||||||| | | Sbjct 58917 ATATTGGAATTTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAA 58858 Query 76199 TTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAA---ATCAAATTTTCCATCT 76255 ||| | | || || || || | ||| ||| || | |||| | || Sbjct 58857 TTTTGTGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCG 58798 Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 | || |||||||| | ||| |||||||||| ||| || || ||||| |||| || || Sbjct 58797 TTTACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCA 58738 Query 76316 GCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGG 76375 | |||| || || ||||| || ||||| || || || ||||| || | |||||||||| Sbjct 58737 GTGTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGG 58678 Query 76376 TTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGT 76435 ||||||||| |||| || ||||| || ||||| | ||| || || |||||||| | ||| Sbjct 58677 TTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGT 58618 Query 76436 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTA--TTATAGATTTGTATCGCTTCT 76493 | ||| | ||||| |||||| | | | ||| | | | | || ||| ||| | Sbjct 58617 GCTTCAACAATAGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTT 58560 Query 76494 CTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAG 76553 || |||||||| | ||| | | |||||||| || |||||| || | | ||| | Sbjct 58559 CTTCTTCATATTTTTCATAAAGCTTCTCAAATTCTTCCCCCCAACAGTCTGCAAGACCGG 58500 Query 76554 GACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGA 76613 |||| |||| |||||||| | ||| | ||| | | ||| | |||||| || | Sbjct 58499 GACAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAACA 58440 Query 76614 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC-TACGTTCTTCATTTCCTGTA 76672 | || || ||||| |||||| ||| || |||| || | ||| |||||| || || || Sbjct 58439 GGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTAC-TTCTTCCTTACCAGTG 58381 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 |||||||| | ||| | || || | | ||||| ||||| |||||||| || || || Sbjct 58380 TTCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCA 58321 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | | | || || |||||||| || |||||||| | |||||| || |||||||| || || Sbjct 58320 AAAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACC 58261 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | |||||| |||| || || ||||| |||||||||||||| ||| ||| | || Sbjct 58260 CGCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTA 58201 Query 76853 GCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAG 76912 || | || | | | || ||||| ||||| || ||||| || | ||||| Sbjct 58200 GCTCTTATGCAATGGACATGAAGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACAT 58141 Query 76913 CGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAG 76972 | ||||||||||||||||| || || ||||||||||| |||| || | ||||| Sbjct 58140 TGCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAA 58081 Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || | ||| | | ||| | ||| ||| | ||||||| || || ||||| Sbjct 58080 GAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAG 58021 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 ||||||| || | || |||||||| | ||| |||| || ||||| | ||||||| Sbjct 58020 TATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATT 57961 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || | || || ||||| | ||| || || || |||||| || Sbjct 57960 CCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTTCTGCA 57919 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 ||| || ||||| ||||| || |||||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 77197 TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTT 77247 | ||| |||| || |||| ||| | |||| ||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 105 bits (116), Expect = 1e-17 Identities = 159/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| | | ||| ||||| || || || | |||||||| || ||||| || || Sbjct 1115153 TCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCTTC 1115212 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| | ||| ||| ||||| || || ||||| |||||||| || |||||| Sbjct 1115213 AGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATGCG 1115272 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA-TCATTATG--AATCCACCTTTGAGCCCAATCAGCC 46830 |||| | ||| ||| | | ||| | | || |||||| | ||||| || ||| Sbjct 1115273 ACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTGCC 1115332 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 || ||||| || || |||| ||||| | ||||| ||||| || Sbjct 1115333 TTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAGGAA 1115376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||| | | |||||| || || | || ||||||||| ||||| | || || || || Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || ||||| |||||||| |||||||| | || || || | | || || || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 | | ||||||||| || || || || |||||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 47070 AAA 47072 || Sbjct 1115933 GAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712667254568640