Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq154 132 4e-26 seq397 111 1e-19 seq27819 89.7 4e-13 seq504 87.8 2e-12 >seq154 Length=1330714 Score = 132 bits (146), Expect = 4e-26 Identities = 375/568 (66%), Gaps = 26/568 (5%) Strand=Plus/Plus Query 104684 ACATACGTTAACTGGCCCGTGTCATTTTTGGAACCAAGTCAAATGGCCGCCAACGGGTTC 104743 |||| || || |||||||| || || ||| ||| ||| | || || || || Sbjct 116886 ACATTCGAGAAATGGCCCGTATCTTTCTTGTCACCCCAACAACTTGCAAGAAATGGTTTT 116945 Query 104744 TACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAAATAATGCGC 104803 || ||| | || ||| ||||||||| | ||||| ||||||||||| ||||| |||||| Sbjct 116946 TATTATCTCGGATGCGGTGACGAAGTGAGATGCGCTTTCTGCAAAGTCGAAATTATGCGC 117005 Query 104804 TGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAGTGCCCGTTT 104863 ||| | || || ||||| ||||| |||||| | ||||||| || ||||| || ||| Sbjct 117006 TGGGTCGAAGGTGACGATCCGGCTAGAGATCACCAGAGATGGGCACCCCAGTGTCCATTT 117065 Query 104864 TTGCGA-AAAAATACTGCACA-ACAAAATCAAACAATTGCTACACACATTCAATCCACTC 104921 || || || || | || || ||| || | || || || | Sbjct 117066 TTAAGACAACAAGCCAGCGCAGGCAACGTC--------CCGTCA------GAAACCCCAG 117111 Query 104922 CTGCAGCAGTGCAAGTTG-TTGTTG-GTCAAGATGAATGC-----GGATCGTCGCGTGTG 104974 || | | | | | || || | |||| | | | | || | ||| ||| | Sbjct 117112 CTTCCGACGGACGCGATGAATGCGGAGTCAGGGCGCCTCCTTCCGTGAAC-TCG-GTGCG 117169 Query 104975 A-TGCCCGGCCCTATACACCCTAAATACGGCTCCGAGTCTGCACGTTTAAAAACTTTTGA 105033 | |||| ||||| | ||||| ||| | ||| ||| | || ||| | ||| || Sbjct 117170 AATGCCTGGCCCGGTGCACCCGCGATATGCCTCGGAGGCGGCTCGTCTGCGAACCTTCAG 117229 Query 105034 GGATTGGCCACTTAGTTTAAAACAAAGGCCAGAGCAATTGGCCGAAGCCGGTTTTTACTA 105093 || ||||| | | | | |||| ||| ||| | ||||| |||||||| || | || Sbjct 117230 CGACTGGCCTCGTTGCATGGGCCAAAAGCCCGAGGAGTTGGCGGAAGCCGGATTCTTTTA 117289 Query 105094 CACCGGCAAAGGTGATAAAGTCAAATGTTTTTATTGCGACGGCGGCCTTAAGGATTGGGC 105153 |||||| |||| |||||| |||||||| || |||||||| || || || || |||| Sbjct 117290 CACCGGGCAAGGGGATAAAACTAAATGTTTCTACTGCGACGGAGGTCTGAAAGACTGGGA 117349 Query 105154 AAACGCCGACGAACCGTGGGAGGAACATGCACGTTGGTTTGATCGCTGTTCGTTCGTAAA 105213 |||| ||||| |||||||| | || || || ||||||||||| || | | ||| | Sbjct 117350 GAACGACGACGTCCCGTGGGAACAGCACGCGCGGTGGTTTGATCGATGCGCTTACGTTCA 117409 Query 105214 ACTGGTCAAAGGACACGACTACGTGCAG 105241 ||||| ||||| | |||||||| ||| Sbjct 117410 GCTGGTGAAAGGCCGAGACTACGTTCAG 117437 >seq397 Length=962699 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||||| |||||||| ||| |||| |||||| | Sbjct 56613 ATGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTCC 56554 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || || ||||| |||||| |||| || || Sbjct 56553 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 56494 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| |||||| |||||| |||||||| | ||| || |||| || || Sbjct 56493 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAAC 56434 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAA 111333 || ||||| || || || || || || || |||||||| |||||||||||| || Sbjct 56433 ATCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCGTCTTCGCGGTGGCAATTAA 56380 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| |||| || |||||||| ||| |||| |||||| Sbjct 56841 ATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTCT 56782 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || ||| |||||||||||| ||||| || || Sbjct 56781 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAG 56722 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | ||||| |||||| |||||||| | ||| || |||| ||||| Sbjct 56721 CAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGTCGCACTTTGTCCGACTATAAC 56662 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || ||| | ||| ||||||| || ||||||| Sbjct 56661 ATCCAGAAAGAGTCCACCCTTCATCTGGTGCTGCGTCTCCGTGGTGGCA 56613 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| |||| || |||||||| ||| | || |||||| | Sbjct 57297 ATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATAACCTTAGAGGTGGAACCTTCC 57238 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || || || || ||||| || ||| ||||| ||||| Sbjct 57237 GACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 57178 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | ||||| ||||||||||||||| | ||| || |||| ||||| Sbjct 57177 CAGCGTCTTATCTTCGCGGGTAAACAATTGGAAGATGGTCGCACTTTGTCCGACTATAAC 57118 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || ||| | ||||||||||| || ||||||| Sbjct 57117 ATCCAGAAAGAGTCCACCCTTCATCTGGTGTTGCGTCTCCGTGGTGGCA 57069 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| ||||| || || || ||||| || ||| ||||| || || Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||| | ||| | |||||| ||||||| ||||| |||||| | || ||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | |||| |||||||| ||||| ||||| ||| | | ||||| || Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| |||||||||||||| || || | || |||||| | || || || Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGG 58439 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||||| |||||||| ||| ||||| |||||| Sbjct 57525 ATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTCT 57466 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || || ||| |||||||||||| ||||| ||||| Sbjct 57465 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCAG 57406 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | || || |||||| | |||||| || || |||| ||||| Sbjct 57405 CAGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAAC 57346 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||| || || || ||| | || |||||||| || ||||||| Sbjct 57345 ATCCAGAAAGAGTCCACCCTTCATCTGGTATTGCGTCTCCGTGGTGGCA 57297 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| ||||| || ||||| | ||||| ||||||||||| | || ||| || Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | |||||| |||||| |||||||| || |||| || ||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| || || | ||| || || |||||||||||| ||| || | || || || Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || ||||||||||| || |||||||| || ||||| || ||||||| Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACGTCTCCGTGGTGGCA 57981 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| |||| || |||||||| ||| |||| |||||| | Sbjct 57069 ATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTCC 57010 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || || || || ||||| |||||| |||| || || Sbjct 57009 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 56950 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| ||| || ||||| ||||||||| | ||| || | || ||||| Sbjct 56949 CAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAAC 56890 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || |||||||| || || ||| | ||||||||||| || ||||||| Sbjct 56889 ATCCAGAAAGAATCCACCCTTCATCTGGTGTTGCGTCTCCGTGGTGGCA 56841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || || || |||||||| || ||| | ||| || | Sbjct 57981 ATGCAGATCTTTGTAAAGACTTTAACTGGCAAAACAATAACCTTAGAAGTTGAGTCATCG 57922 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || || || |||||||||||| |||| ||||| Sbjct 57921 GATACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 57862 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | |||| || || ||||| ||||||||| | ||| || | || ||||| Sbjct 57861 CAGAGATTGATTTTCGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAAC 57802 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || ||| ||||| ||||||| || ||||||| Sbjct 57801 ATCCAGAAGGAGTCCACCCTTCATCTAGTGCTGCGTCTCCGTGGTGGCA 57753 >seq27819 Length=1354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| | ||||| || ||||| || ||||| ||||| Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 1146 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | || ||| |||||| |||||||| || ||||| || ||| Sbjct 1147 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAA 1206 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||| | ||| ||||| |||||||||||| || || | || || || Sbjct 1207 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAAC 1266 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTT 111311 || || || ||||| || || |||||||| || Sbjct 1267 ATCCAGAAGGAATCCACTCTGCATTTAGTATT 1298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||||||||| | ||||| || ||||| || ||||| ||||| Sbjct 175 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 234 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| ||||| || || ||||| || || Sbjct 235 GATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAG 294 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | || ||||| || ||||||||| || | ||||||||||| Sbjct 295 CAGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAAT 354 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || | |||||||| ||| | |||| || || Sbjct 355 ATCCAGAAAGAATCCACTTTGCATTTAGTATTGAGATTGCGAGGAGG 401 >seq504 Length=80497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || |||||||| || | || ||||| || ||||| ||||| || || Sbjct 73116 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 73175 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || ||| |||||| |||||||||||| |||| || || Sbjct 73176 GGATACAATTGAGAATGTTAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 73235 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | ||||| | ||| ||||| || | |||||| ||| | |||| || || Sbjct 73236 ACAACGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTCTCCGACTACAA 73295 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || ||||| || || |||||||| | ||||| | ||||| Sbjct 73296 CATCCAGAAGGAATCGACTCTTCATTTAGTACTTCGTCTAAGAGGTGG 73343 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || | || ||||| || ||||| | ||| || || Sbjct 72661 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACTATTACATTAGAAGTTGAGCCATCG 72720 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| |||||| |||||||| || |||| || ||| Sbjct 72721 GATACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAGGGGATTCCTCCTGACCAA 72780 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | ||||| | ||| ||||| |||||||||||| || || | || || || Sbjct 72781 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGACTACAAC 72840 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 || || |||||||| || || |||||||||||| Sbjct 72841 ATTCAGAAAGAATCCACTCTGCATTTAGTGTTG 72873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421657093518952