Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1644865 248 9e-61 >seq1644865 Length=2180 Score = 248 bits (274), Expect = 9e-61 Identities = 499/734 (68%), Gaps = 6/734 (1%) Strand=Plus/Minus Query 15901 AACACC-CATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTA 15959 |||||| |||| |||| || |||| || | || || ||||| |||||||| || || | Sbjct 791 AACACCACATT-TTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTCCCTTCGA 733 Query 15960 AAGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCA 16019 || ||||| ||||| || || || ||||| | || | | ||| | |||| Sbjct 732 GGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAGTGCTTTTCACATCCCA 673 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAA 16079 || | | | |||||| || |||||||| || || || |||||| ||||| | Sbjct 672 ACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTCATTAATGTACAATTCA 613 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 |||| || || || || | || | |||||| |||| |||||| || ||| || | Sbjct 612 TTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGTTCAATTGAAACGGCGT 553 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGAC--GGTGTATGGTTTAGGTGTTTAAACAT 16197 || |||| || || ||| | || || | || ||| ||| || || |||||||| Sbjct 552 CTGTAATTATTTCCGTGACA-GT-TTCCTTACTAGGTTTATTAACCAGATGCTTAAACAT 495 Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 || |||||||| ||| ||| || ||||| || || ||||||||||| |||||| Sbjct 494 TAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGTTCGTTACTAAAAGT 435 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | |||||||| ||||| ||||| | ||| || || |||||||| || || || Sbjct 434 AAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCAAAAGATCCACTGAA 375 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||| || |||||||| ||||| || | | || ||| ||||| | ||| |||| ||| Sbjct 374 AAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAAGAAGCTTCTTCATT 315 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 | |||||| |||| |||||||| | ||| | ||| | ||||| ||||| Sbjct 314 GCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGGAGAGTTTCGATGGC 255 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 ||||| | |||| |||||| | | ||| |||||| ||||| ||||||||||| || Sbjct 254 GTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCGATCAGTAAACTATA 195 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGC 16557 |||||| ||| | ||| || || ||||| || || || ||| | | || || | Sbjct 194 CATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAGAACCTTGCTTCAGG 135 Query 16558 TATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGC 16617 | ||| | || | | || | ||| ||| |||||| || || || || || ||| Sbjct 134 AACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACAATTCCATCCGATGC 75 Query 16618 AGCAAAAAACGCCA 16631 |||||| || |||| Sbjct 74 AGCAAAGAATGCCA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500779818829920