Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1644865 298 6e-76 seq1277878 86.0 7e-12 >seq1644865 Length=2180 Score = 298 bits (330), Expect = 6e-76 Identities = 548/799 (69%), Gaps = 8/799 (1%) Strand=Plus/Minus Query 23820 TCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 23876 ||||||| || |||||| || |||||| |||||||| || | || || || ||| Sbjct 808 TCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAA 749 Query 23877 TTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAG 23936 |||||||| ||||| | || ||||| |||||||| || | ||||| ||| |||||| Sbjct 748 TTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAG 689 Query 23937 ATTCTTTTAA-ATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTT 23995 | ||||| | ||||||| || | | |||||| |||||||| || || || ||| Sbjct 688 -TGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTT 630 Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||| | | |||||||||||| || || ||| || | || | || | |||||||| Sbjct 629 CATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTG 570 Query 24056 TTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAA 24115 |||||| || || |||||||| || || | || ||||| | ||| ||| || | Sbjct 569 TTCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAAC 510 Query 24116 TAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAA 24175 | ||| |||||||| || || ||||||||| || ||||| || || ||| || | Sbjct 509 CAGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAG 450 Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 |||||| ||| || ||||| ||||| || || | ||| || |||||||| || | || Sbjct 449 TTCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGC 390 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| |||||| || || || ||||| || | ||||| |||| || |||||| | || Sbjct 389 AAAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTA 330 Query 24296 ACCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 | || |||| ||||| | |||||| ||||| |||||||| ||||| || Sbjct 329 AGAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGG 270 Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412 | || || || || |||||||| | ||||||| ||| ||| | ||| ||||| Sbjct 269 GAGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATC 210 Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472 |||| | |||||||||||| |||| |||||| || || || || ||||| || Sbjct 209 GATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAA 150 Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532 | || || || | || || | ||| || || | || | || || || || || Sbjct 149 GAACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGAC 90 Query 24533 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 24592 ||||| || || ||||| || |||| ||||| || |||| ||| ||||| Sbjct 89 AATTCCATCCGATGCAGCAAAGAATGCCAGAACATGGGAGATGAAATGACGTTCATCTGG 30 Query 24593 TGTTAGTTTATTCCAATCA 24611 ||||| ||||||||| Sbjct 29 CTGAAGTTTGTTCCAATCA 11 >seq1277878 Length=636 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 53964 CCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 54022 ||| |||||| |||||| ||| |||||| ||||||||||| |||||||| | || Sbjct 255 CCCCAACATTCGTCCAAATTCGGAGATTCATGAGGACACATCAAACACCACTCTGCATCC 314 Query 54023 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 54082 | || |||| | ||| || || |||||||||||||| || ||| |||||||| | | Sbjct 315 TGCTCGACTCTCTCCATGAATAGGTCAGGAATCCAAAGGGCGTAAAACAGATCTCTCGCT 374 Query 54083 CTATGTTCCTCGTT 54096 || | ||| || || Sbjct 375 CTTTCTTCTTCCTT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581375485874880