Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1488354 111 1e-19 seq242576 95.1 1e-14 >seq1488354 Length=939 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| || || || || ||||| || ||| ||| | || Sbjct 822 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCTTCA 763 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| |||||||||||| | || || ||| Sbjct 762 GACACTATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATCCCACCGGACCAA 703 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || ||||| |||||||| | ||| | ||||||||| Sbjct 702 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAAT 643 Query 29142 ATTCAGAAGGAATCTACTCTTCA-CATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||| | || | || | ||| ||||| ||||||| Sbjct 642 ATTCAGAAGGAGTCTACATTACATCTTGTTCTTA-GATTAAGAGGAGG 596 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| | || || ||||| ||||| ||| ||||| | Sbjct 367 AATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTC 308 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||||| |||||||| ||| | || ||| || Sbjct 307 TGACACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 248 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||| ||||| || |||||| |||||||| | ||| || || ||||| Sbjct 247 ACAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAA 188 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||| || |||||||| ||||| | ||||| Sbjct 187 TATTCAAAAAGAATCTACCCTTCATTTAGTGTT 155 >seq242576 Length=334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 29045 AAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAA 29104 ||||||| |||||||||||| | || |||||||||||| ||||| ||||| || || Sbjct 328 AAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGGTAA 269 Query 29105 ACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 |||||| |||||| | ||| || |||||| ||||| || || ||||| || ||||| Sbjct 268 ACAACTTGAAGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCTTCA 209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| || || || || ||||| || ||| ||| | || Sbjct 183 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCGTCA 124 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||||||| |||||||||||| | || || ||| Sbjct 123 GACACTATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATCCCACCGGACCAA 64 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || ||||| |||||||| | ||| | ||||||||| Sbjct 63 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAAT 4 Query 29142 ATT 29144 ||| Sbjct 3 ATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419651663753180