Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1644865 123 3e-23 seq1135619 98.7 1e-15 seq678478 95.1 1e-14 seq1656961 82.4 8e-11 >seq1644865 Length=2180 Score = 123 bits (136), Expect = 3e-23 Identities = 426/661 (64%), Gaps = 4/661 (1%) Strand=Plus/Plus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 || || ||||||||| || || ||||| || || || || || || || |||||| Sbjct 36 GAACGTCATTTCATCTCCCATGTTCTGGCATTCTTTGCTGCATCGGATGGAATTGTCAAC 95 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 ||||| |||| ||| | ||| || ||| | || || | || || ||| ||| ||| Sbjct 96 GAGAACTTGGTGGAGAGGTTCTGCCAAGAGATTCAAGTTCCTGAAGCAAGGTTCTTTTAC 155 Query 116855 GGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACG 116914 || || ||||| || || ||||| ||| ||||||||| || ||||| || Sbjct 156 GGTTTCCAGATTATGATCGAAAACGTTCACAGTGAAATGTATAGTTTACTGATCGATACC 215 Query 116915 TACGTGCGCTCTTCGGAGGAGAAGCTCCGTT--TGTTGAACGCCATCGAGACGATGCCGT 116972 || | || || | |||| || | || ||||||||||| || | || | Sbjct 216 TATATAT-CTGATCCTAA-AGAAAAAACGAAACTCTTTAACGCCATCGAAACTCTCCCAT 273 Query 116973 GCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCG 117032 | |||||| |||| ||||| ||||| | | ||||| | | ||| || | | || Sbjct 274 GTGTCAAAAAGAAAGCCGACTGGGCTTTATGTTGGATTGGCAATGAAGAAGCTTCTTACG 333 Query 117033 GCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCG 117092 ||| | | || || || || | || || || | || || || ||| || | Sbjct 334 CCGAAAGAGTTGTTGCGTTTGCCTCTGTTGAAGGGATATTTTTCAGTGGATCTTTTGCTG 393 Query 117093 CCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCA 117152 | || |||||||||||||| | || || ||||| || || ||||| || ||||| || | Sbjct 394 CTATTTTTTGGCTCAAGAAGAGAGGACTGATGCCAGGACTTACTTTTAGTAACGAACTTA 453 Query 117153 TCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGC 117212 | || ||||| || ||||| ||| ||| || || || || |||| |||||| |||| Sbjct 454 TATCTAGGGATGAAGGTCTTCATACCGATTTCGCGTGCTTAATGTTTAAGCATCTGGTTA 513 Query 117213 AGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGC 117272 | ||| || || |||| ||| || | || ||||| || | || || || Sbjct 514 ATAAACCTAGTAAGGAAACTGTCACGGAAATAATTACAGACGCCGTTTCAATTGAACAAG 573 Query 117273 GCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGC 117332 ||| | || || || |||| || ||| | ||| | ||||| | ||| | Sbjct 574 AATTCTTAACAGATGCATTGCCCGTTGCTCTAATTGGAATGAATTGTACATTAATGAAAC 633 Query 117333 AATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACA 117392 | ||||| || || |||||||| || || | | ||| ||| | | |||||||| | Sbjct 634 AGTACATTGAATTTGTCGCCGATAGACTTTTAATAGAGTTGGGATGTGAAAAGCACTATA 693 Query 117393 A 117393 | Sbjct 694 A 694 >seq1135619 Length=547 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||||||||| || ||||| | || || || |||||||| | || || ||| | | Sbjct 143 ATGCAAATATTTGTCAAAACCTTAACTGGAAAGACCATCACTCTTGAAGTTGAACCTTCA 202 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||||| | || ||||| || ||||| | |||||| Sbjct 203 GATACAATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGAATCCCACCAGACCAG 262 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || || || || || || | ||||| || | ||||||||| Sbjct 263 CAGAGATTGATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACACTGAGTGACTACAAC 322 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| |||| || ||| |||| ||| | |||| || || Sbjct 323 ATCCAAAAGGAGTCCACTCTTCATTTAGTATTGAGGCTGAGAGGAGG 369 >seq678478 Length=406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| ||||| ||||| || || || ||||| |||||| |||| || ||||| | || Sbjct 1 GCAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGA 60 Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 || | | | | || | ||||| | |||||||| ||||| || | || || || Sbjct 61 CACAATTGAGAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAACA 120 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || | || | || || || || || || || | || || | | ||||||||||| Sbjct 121 GAGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAACAT 180 Query 40872 CCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||| |||| || ||| |||| |||| ||||| || || Sbjct 181 CCAAAAAGAGTCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGG 225 >seq1656961 Length=2936 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||| | || || |||||||| || | || || || || | Sbjct 2807 ATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACCATTACTCTTGAAGTTGAGGCTTCA 2748 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | || | ||||||| || || || || ||||| | ||||| Sbjct 2747 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCTGACCAA 2688 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| || | |||| ||| || ||||| || || || | ||| |||||| || |||||| Sbjct 2687 CAAAGATTAATCTTCGCAGGAAAACAACTTGAAGATGGGCGAACCCTCTCTGATTACAAC 2628 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 2627 ATCCAGAA 2620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504505500106560