Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1374022 120 3e-22 seq1488354 105 7e-18 seq37400 105 7e-18 seq1339226 104 3e-17 seq1294437 104 3e-17 seq1610295 93.3 5e-14 seq193060 91.5 2e-13 seq926364 89.7 6e-13 seq907291 87.8 2e-12 seq233337 87.8 2e-12 seq207857 87.8 2e-12 seq1576232 86.0 7e-12 seq663341 82.4 9e-11 >seq1374022 Length=732 Score = 120 bits (132), Expect = 3e-22 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 60052 TTATGAAAAAT--TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||| |||| ||||||| |||| ||||||||||||| |||||||||||||||||||| Sbjct 343 TTATGTAAAAAGATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCG 284 Query 60110 GACATACTCACCACTATACTACCGAGGATTGAATA 60144 | ||||||||||||||||||||||||| ||| || Sbjct 283 GGGATACTCACCACTATACTACCGAGGAATGAGTA 249 >seq1488354 Length=939 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||||||||| | ||| | ||| |||||| |||||||||||||| |||||| Sbjct 367 TCCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACT 426 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | | || ||||| || || ||||| || || | || ||| ||||| | || Sbjct 427 AAGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGG 486 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||| || ||| ||| |||||| ||| | | | | ||||| | || | Sbjct 487 AATACCCTCTTTATCC-TGAATTTTTGCTTTCACATTTTCAATTGTGTCTGAAGGCTCTA 545 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | ||||| ||||| ||||||| ||||| ||||| ||||||||| Sbjct 546 CTTCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCATT 595 >seq37400 Length=305 Score = 105 bits (116), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 146 TTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGTACTCACC 205 Query 60122 ACTATACTACCGAGGA 60137 |||||| ||||||||| Sbjct 206 ACTATAATACCGAGGA 221 >seq1339226 Length=692 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||||||| |||||||||| ||||||||||||| Sbjct 553 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTA 612 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 613 TACTACCGAGGA 624 >seq1294437 Length=650 Score = 104 bits (114), Expect = 3e-17 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 522 CCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATA 463 Query 60128 CTACCGAGGA 60137 |||||||||| Sbjct 462 CTACCGAGGA 453 Score = 86.0 bits (94), Expect = 7e-12 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 650 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTACCGAGGA 596 >seq1610295 Length=1542 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 60057 AAAAATTT--TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 73 AAAAATATCCTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 14 Query 60115 ACTCACCACTATA 60127 ||||||||||||| Sbjct 13 ACTCACCACTATA 1 >seq193060 Length=327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 72 AAAAATTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 13 Query 60116 CTCACCACTATA 60127 || ||||||||| Sbjct 12 CTTACCACTATA 1 >seq926364 Length=466 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/87 (84%), Gaps = 4/87 (5%) Strand=Plus/Minus Query 60039 AACAAATTAACGTTTATGAAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCC 60096 || ||| ||| |||| ||||| ||| |||| |||| ||||||||||||| ||||||| Sbjct 85 AATAAAATAATATTTA--AAAAACTTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCC 28 Query 60097 CGCGTGACAGGCGGACATACTCACCAC 60123 |||||||||||||| ||||||||||| Sbjct 27 CGCGTGACAGGCGGGGATACTCACCAC 1 >seq907291 Length=460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 397 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 338 Query 60126 T 60126 | Sbjct 337 T 337 >seq233337 Length=333 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 68 AAAAATACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 9 Query 60118 CACCACTA 60125 |||||||| Sbjct 8 CACCACTA 1 >seq207857 Length=329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || ||||| |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 68 AAGAATTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 9 Query 60117 TCACCACT 60124 | |||||| Sbjct 8 TTACCACT 1 >seq1576232 Length=1282 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | | |||||||||| ||||||||||||||||||||| |||| |||||||| Sbjct 870 CTCCCCGACTGCAAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACCCACCACTA 811 Query 60126 TACTACCGAGGATTGAATA 60144 |||| || |||| |||||| Sbjct 810 TACTGCCAAGGA-TGAATA 793 >seq663341 Length=403 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 42959 TCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAG 43018 |||||| || | || || ||||| | |||| || || || ||||| || ||| || Sbjct 403 TCCTCTCAACCTCAGAACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCACTAAG 344 Query 43019 AGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCAC 43078 ||| || | || || || ||||| ||||| || || | || ||||||||| | || | Sbjct 343 AGTACGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAAT 284 Query 43079 GCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATC 43138 | ||| || || ||||||| ||| | | | | ||||| | ||| || || Sbjct 283 ACCCTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATAGTGTCAGATGCTTCAACCTC 224 Query 43139 GACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || ||||| ||||| || || || |||||||||||||| Sbjct 223 TAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCAT 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559926967507680