Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq252373 122 1e-22 seq1488354 111 2e-19 seq1135619 105 1e-17 seq770237 95.1 2e-14 seq1605470 93.3 6e-14 seq663341 89.7 7e-13 seq985473 84.2 3e-11 >seq252373 Length=335 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||| ||||||| | ||| |||||||||||| | ||||| ||||| ||||| || Sbjct 29 CCACCTTTAAGTCTGAGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGAC 88 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || || ||||| |||||||| ||||||| || || || || ||| Sbjct 89 AGTGTTCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGA 148 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||||||||| Sbjct 149 ATTCCTTCTTTATCTTG 165 >seq1488354 Length=939 Score = 111 bits (122), Expect = 2e-19 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||||||||| | | | || | |||||| || ||||| ||| || ||||||||||| Sbjct 366 TTCCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGA-ATATTATAATCA 424 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||| ||||||| ||| |||| |||||||||||||||||| ||||| || || || || Sbjct 425 CTAAGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGT 484 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| || |||||||| || || |||||| ||| Sbjct 485 GGAATACCCTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATTGTGTCTGAAGGCTCT 544 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | ||||| ||||| || ||||| || || | || ||||||||| Sbjct 545 ACTTCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCATT 595 >seq1135619 Length=547 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || || ||||| ||||| | ||| || || || || || || || Sbjct 371 TTCCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAC 312 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || || | | ||| || | ||| |||||||||||||||||||| ||||| || || | Sbjct 311 TCAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTG 252 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | ||||||||||||||||| ||||||||| ||| | Sbjct 251 GGATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAA 192 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || ||||| || || || ||||| ||||| | ||||||||||| Sbjct 191 CTTCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCAT 143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| | |||||| || | |||||||| || || || ||||| | Sbjct 141 CCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATCGCTA 82 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| |||||||||||||||||||| |||||||| || ||| Sbjct 81 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTGGA 22 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 21 ATGCCTTCTTTGTCTTG 5 >seq770237 Length=425 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || || ||||| | ||| |||||||| ||||| || || Sbjct 280 CCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACTG 221 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||||| ||||||||||| |||||||| || || || Sbjct 220 AGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGGG 161 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||||||| || ||| Sbjct 160 ATACCTTCTTTATCTTGAATCTTTGCCTTGACATTTTCAATTGTATCTGAAGGCTCAACT 101 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||||||| || || || || || || ||||| | || || |||||||| Sbjct 100 TCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATTTT 51 >seq1605470 Length=1495 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || || ||||| ||||| | ||| || || || || || || || Sbjct 156 TTCCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCAC 97 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 || || | | ||| || | ||| |||||||||||||||||||| ||||| || || | Sbjct 96 TCAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTG 37 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||||||||| Sbjct 36 GGATTCCTTCTTTATCTTG 18 >seq663341 Length=403 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| | || |||||||| |||||||| || |||||| | | ||| || Sbjct 387 ACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCACTAAGAGTACGACCATCTTCA 328 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| |||||||||||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 327 AGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAATACCCTCTTTATCTTG 269 >seq985473 Length=485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/307 (70%), Gaps = 23/307 (7%) Strand=Plus/Minus Query 112497 ATATAATATATTTTAAATCGAATACTTTAAATGATATTTTATATA-AAT-TATGTTCTGA 112554 ||||||||||| ||| || |||| | || || ||||| |||||| ||| ||| || | Sbjct 460 ATATAATATATATTATATATAATA-TATATAT-ATATTATATATATAATATATATTATAT 403 Query 112555 AGATATTATAATTCCCGATGATAGttatataaataatttaaattata-atgatatgt-tt 112612 | |||||||| | | ||| | |||| ||||| || |||||| || ||| | || Sbjct 402 ATATATTATATATATATAATATATATTTATATATAATATATATTATATATATTATATATT 343 Query 112613 atatctgaaata-atgggatttaata-aaattatgagacaatttatagaattatttaaaa 112670 |||| | | ||| || || ||||| | ||||| | | ||| ||| ||||| || || Sbjct 342 ATATATAATATATATTATATATAATATATATTAT-ATATAATATAT---ATTATATATAA 287 Query 112671 gaaatatttattatataagaaagaatatattattatttgttattataaattttattttat 112730 | ||||| ||||| | | | |||||| |||||| | || |||| ||| ||| |||| Sbjct 286 TATATATT--ATATATTATATATAATATA-TATTATAT-ATAATATATATTATATATTAT 231 Query 112731 ctatattaattgtttatgtgggtattgtatatattaaaaagtat-gaaaatttatatt-t 112788 ||||||| | ||| | ||| ||||||||| | | ||| | ||| |||||| | Sbjct 230 ATATATTA----TATAT-TATATATAATATATATTATATATTATATATAATATATATTAT 176 Query 112789 atataAT 112795 |||| || Sbjct 175 ATATTAT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728065177451520