Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1644865 172 5e-38 seq1488354 113 4e-20 seq678478 98.7 9e-16 seq242576 86.0 5e-12 seq1135619 84.2 2e-11 >seq1644865 Length=2180 Score = 172 bits (190), Expect = 5e-38 Identities = 489/743 (66%), Gaps = 14/743 (2%) Strand=Plus/Plus Query 57694 TGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCAC 57753 |||| || || || ||||| ||||| ||||| |||||||| ||||| || || || | | Sbjct 61 TGGCATTCTTTGCTGCATCGGATGGAATTGTCAACGAGAACTTGGTGGAGAGGTTCTGCC 120 Query 57754 AAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACG 57813 |||| | ||||| | || || || | ||||||||| || || | || ||||||| Sbjct 121 AAGAGATTCAAGTTCCTGAAGCAAGGTTCTTTTACGGTTTCCAGATTATGATCGAAAACG 180 Query 57814 TGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC---AACGACGAGA 57870 | || ||||||||| |||| |||||||| || | || || || | | Sbjct 181 TTCACAGTGAAATGTATAGTTTACTGATCGATACCTATATATCTGATCCTAAAGA--AAA 238 Query 57871 AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGT 57930 |||| | ||| || ||||| |||||||| | || || ||||| || || ||| Sbjct 239 AACGAA-ACTCTTTAACGCCATCGAAACTCTCCCATGTGTCAAAAAGAAAGCCGACTGGG 297 Query 57931 CAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCG 57990 | | ||||| | | || | | |||||| || | | ||||| ||| Sbjct 298 CTTTATGTTGGATTGGCAATGAAGAAGCTTCTTACGCCGAAAGAGTTGTTGCGTTTGCCT 357 Query 57991 CCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGATGAAGAAACGC 58049 | || ||||| ||||| ||| | | | |||| || || || |||||| | ||||| | Sbjct 358 CTGTTGAAGGGATATT-TTTCAGTGGATCTTTTGCTGCTATTTTTTGGCTCAAGAAGAGA 416 Query 58050 GGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCAT 58109 || |||||||| || || || ||||| ||||| | ||||| | || || ||||| ||| Sbjct 417 GGACTGATGCCAGGACTTACTTTTAGTAACGAACTTATATCTAGGGATGAAGGTCTTCAT 476 Query 58110 ACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATC 58169 || ||||| |||||| |||||| || | || |||||||| | ||| || Sbjct 477 ACCGATTTCGCGTGCTTAATGTTTAAGCATCTGGTTAATAAACCTAGTAAGGAAACTGTC 536 Query 58170 TTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCG 58229 ||| || || || || || || | || ||| | || || | || || || | || Sbjct 537 ACGGAAATAATTACAGACGCCGTTTCAATTGAACAAGAATTCTTAACAGATGCATTGCCC 596 Query 58230 GTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGAC 58289 || || | | || ||||| | || ||| | |||||||||| ||||| ||||| Sbjct 597 GTTGCTCTAATTGGAATGAATTGTACATTAATGAAACAGTACATTGAATTTGTCGCCGAT 656 Query 58290 AGACTTTTGCTCGAACTG--AT-TGGAGAGCGTCATTACAACACGAAAAATCCGTTTGAT 58346 |||||||| | || || || || | ||| | || || ||||||| || || Sbjct 657 AGACTTTTAATAGAGTTGGGATGTGAAAAGC---ACTATAAAGTTGAAAATCCTTTAGAC 713 Query 58347 TTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAA 58406 || ||| | || || ||||| || || || || || || || || | ||| | ||| Sbjct 714 TTCATGGAGAATATTTCCCTCGAAGGGAAAACTAATTTCTTTGAGAAGAGAGTAGGTGAA 773 Query 58407 TATCAAAAATACGGCGTGATGAG 58429 |||||||||| || || ||||| Sbjct 774 TATCAAAAATGTGGTGTTATGAG 796 >seq1488354 Length=939 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| || || | || || ||||| || Sbjct 366 ATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTCT 307 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| ||| || || || | || || ||||| Sbjct 306 GACACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCAA 247 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || ||||| ||||| ||||| |||||||| | || |||| || || || Sbjct 246 CAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAAT 187 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||||||||| || |||||| | || | || || ||||| || Sbjct 186 ATTCAAAAAGAATCTACCCTTCATTTAGTGTTGAGGCTCAGGGGAGG 140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| | || || ||||| |||||| | || || || || || Sbjct 594 ATGCAAATTTTTGTGAAGACCTTAACGGGAAAAACTATCACCTTGGAAGTAGAGCCTTCA 535 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| ||| || || || | || || ||||| Sbjct 534 GACACAATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCAA 475 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || ||||| ||||| | ||||| | || | || |||||||| Sbjct 474 CAGAGATTAATTTTTGCTGGAAAACAACTAGAAGATGGCAGAACGCTTAGTGATTATAAT 415 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| ||||| || | ||||| || ||| Sbjct 414 ATTCAAAAGGAATCCACATTACATCTTGTGCTT 382 >seq678478 Length=406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31195 GCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGA 31254 |||||||||||| || || || ||||| ||||| |||||| |||| |||||| | || || Sbjct 1 GCAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGA 60 Query 31255 CAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCA 31314 || | || | || ||| | ||| ||||| |||||| | || ||||| || || Sbjct 61 CACAATTGAGAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAACA 120 Query 31315 GCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACAT 31374 | | | || || ||||| || || | ||||| | || |||| || || ||||| Sbjct 121 GAGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAACAT 180 Query 31375 TCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || || ||| | || || | |||| || |||| Sbjct 181 CCAAAAAGAGTCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGGTA 227 >seq242576 Length=334 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| || ||||| | || || || || || | || ||||| ||||| ||||| | || Sbjct 319 GGATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGGTAAACAACTTGA 260 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||||||||||| || ||||||||||| || |||||||| || || Sbjct 259 AGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCTTCATCTTGTTCT 200 Query 31405 TAGACTGAGGGGCGG 31419 | | ||||||| || Sbjct 199 TCGGTTGAGGGGAGG 185 >seq1135619 Length=547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||| |||||| | || ||||| |||||| | | || || ||||| || || | ||| Sbjct 8 GACAAAGAAGGCATTCCACCCGATCAGCAGAGATTGATTTTTGCTGGAAAGCAACTTGAA 67 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || | || | |||||||| ||||| ||||| ||||| || || || |||||||| Sbjct 68 GATGGTCGCACACTTAGCGATTACAACATCCAAAAGGAATCTACGCTCCACTTGGTACTT 127 Query 31406 AGACTGAGGGGCGGTA 31421 ||| |||| || |||| Sbjct 128 AGATTGAGAGGAGGTA 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 436496932883520