Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1644865 304 2e-77 seq1277878 89.7 6e-13 >seq1644865 Length=2180 Score = 304 bits (336), Expect = 2e-77 Identities = 547/798 (69%), Gaps = 6/798 (1%) Strand=Plus/Minus Query 33267 TCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33323 ||||||| || |||||| || |||||| |||||||| || | || || || ||| Sbjct 808 TCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAA 749 Query 33324 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAA 33383 |||||||| ||||| | || ||||| |||||||| || || ||||| ||| || || Sbjct 748 TTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAG 689 Query 33384 AtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTC 33443 |||| | ||||||| || | | |||||| ||||| ||||| || || |||| Sbjct 688 TGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTC 629 Query 33444 ATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGT 33503 || | | |||||||||||| || || ||| || | || | || | ||||||||| Sbjct 628 ATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGT 569 Query 33504 TCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAAT 33563 ||||| || || || | ||| || || | || ||||| | ||| ||| || | Sbjct 568 TCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACC 509 Query 33564 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 | ||| |||||||| || || ||||||||| || ||||| || || ||| || | | Sbjct 508 AGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGT 449 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 |||||| ||| || ||||| ||||| || || | ||| || |||||||| || | ||| Sbjct 448 TCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCA 389 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33743 || ||||| || || || ||||| || | ||||| |||| || ||| || | ||| Sbjct 388 AAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAA 329 Query 33744 CCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33800 || |||| ||||| | |||||| ||||| |||||||| ||||| || Sbjct 328 GAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGG 269 Query 33801 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33860 | ||||| ||||| |||||||| | ||||||| ||| ||| | ||| |||||| Sbjct 268 AGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCG 209 Query 33861 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33920 |||| | |||||||||||| |||| |||||| || ||||| || ||||| || Sbjct 208 ATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAG 149 Query 33921 CATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33980 | || || || | || || | ||| || || | || | || || || || || Sbjct 148 AACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACA 89 Query 33981 ATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 34040 |||||||| || ||||| || |||| ||||| || |||| ||| ||||| Sbjct 88 ATTCCATCCGATGCAGCAAAGAATGCCAGAACATGGGAGATGAAATGACGTTCATCTGGC 29 Query 34041 GTTAGTTTATTCCAATCA 34058 ||||| ||||||||| Sbjct 28 TGAAGTTTGTTCCAATCA 11 >seq1277878 Length=636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 63202 CCCAAACATT-GTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63260 ||| |||||| |||||| | ||| |||||| ||||||||||| |||||||| | || Sbjct 255 CCCCAACATTCGTCCAAATTCGGAGATTCATGAGGACACATCAAACACCACTCTGCATCC 314 Query 63261 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTT 63320 | || |||| | ||| || || |||||||||||||| || ||| |||||||| | | Sbjct 315 TGCTCGACTCTCTCCATGAATAGGTCAGGAATCCAAAGGGCGTAAAACAGATCTCTCGCT 374 Query 63321 CTATGTTCCTCGTT 63334 || | ||| || || Sbjct 375 CTTTCTTCTTCCTT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616720889407680