Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1644865 297 2e-75 >seq1644865 Length=2180 Score = 297 bits (328), Expect = 2e-75 Identities = 515/741 (70%), Gaps = 7/741 (1%) Strand=Plus/Minus Query 11327 AACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTC 11385 |||||| | || ||||||||||||| |||| || | || || |||||||| || ||||| Sbjct 791 AACACCAC-AT-TTTTGATATTCACCTACTC-TCTTCTCAAAGAAATTAGTTTTCCCTTC 735 Query 11386 TAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACC 11445 || || |||| |||||| ||| |||||||| | || || || |||||||| || Sbjct 734 GAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAGTGCTTTTCACATCC 675 Query 11446 TAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATT 11505 |||||| |||| | |||||| ||||| ||||| || ||||| |||||| |||||| Sbjct 674 CAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTCATTAATGTACAATT 615 Query 11506 CATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGC 11565 ||| || || ||| | || || | ||| |||| || || || | ||| || ||| || Sbjct 614 CATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGTTCAATTGAAACGGC 555 Query 11566 ATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACAT 11625 || | ||||| ||| | | ||||||| ||| || | | ||| |||||||| Sbjct 554 GTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACCAGATGCTTAAACAT 495 Query 11626 TAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGT 11685 ||| ||||| ||||| ||| | |||||| || ||| ||| ||||| ||| ||| || Sbjct 494 TAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGTTCGTTACTAAAAGT 435 Query 11686 TAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAA 11745 | ||| ||||||| ||||| || || | |||||| ||||||||||| || ||| || Sbjct 434 AAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCAAAAGATCCACTGAA 375 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA 11803 ||||| || || |||| ||||| || || |||||||| | || | ||| || | Sbjct 374 AAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAAGAAGCTTCTTCATT 315 Query 11804 G-ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGC 11862 | ||||| | ||||| || ||||||||||| || ||| | ||||| || || Sbjct 314 GCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGGAGAGTTTCGATGGC 255 Query 11863 GTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 |||||| | | | |||||||| || ||| || ||| ||||| || | ||||||||| Sbjct 254 GTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCGATCAGTAAACTATA 195 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||||| |||| ||||| || || || || || || || | | ||| || | Sbjct 194 CATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAGAACCTTGCTTCAGG 135 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || | || | || || ||| | || ||||| || ||||| ||||| | Sbjct 134 AACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACAATTCCATCCGATGC 75 Query 12043 TGCAAAAAATGCTAGTATATG 12063 ||||| ||||| || | ||| Sbjct 74 AGCAAAGAATGCCAGAACATG 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458782084472640