Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq678478 109 5e-19 seq1135619 104 2e-17 seq242576 95.1 1e-14 seq1488354 91.5 1e-13 seq663341 91.5 1e-13 >seq678478 Length=406 Score = 109 bits (120), Expect = 5e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || |||| |||||| || | || ||||||||||| ||||| || || ||| Sbjct 225 CCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACTC 166 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| || || || |||||| | |||| | || |||||||| || Sbjct 165 AATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGGA 106 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| ||||| | || | |||||| | | || || Sbjct 105 ATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAACT 46 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 || | ||| | || || || || | ||||| ||||| |||||| Sbjct 45 TCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq1135619 Length=547 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| |||| || ||||| ||||| ||||| || || |||| ||||| || Sbjct 355 CAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTCAGTGTGCGACCATC 296 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || || || |||||| | |||| | ||||| || || || || |||||||| || Sbjct 295 TTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGGATTCCTTCTTTATC 236 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 |||||| || | | ||| | ||| || | || || || |||| || | || Sbjct 235 TTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAACTTCAAGAGTGATGGT 176 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| || || || ||||| || |||||||||||| || Sbjct 175 CTTTCCAGTTAAGGTTTTGACAAATATTTGCATACCT 139 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | |||||| || ||||| ||||| |||||||| | ||||| ||||| Sbjct 123 ACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATCGCTAAGTGTGCGACCATCTTCA 64 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || || || |||||| | |||| | ||||||||||| || |||||||||||||| Sbjct 63 AGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTC 8 >seq242576 Length=334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || |||||||| || ||||||||||||| ||| || ||||| || ||| Sbjct 209 TGAAGCGTGGATTCTTTTTGTATATTATAATCGCTCAATGTTCTACCATCTTCAAGTTGT 268 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||||||| | || || | ||| ||||| || || || |||||||| || ||| |||| Sbjct 269 TTACCAGCAAATATAAGCCTTTGTTGATCTGGTGGGATACCTTCTTTATC-CTGAATTTT 327 Query 139682 TG 139683 || Sbjct 328 TG 329 >seq1488354 Length=939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| |||| ||||| ||||||||||| || || || |||| ||| || || Sbjct 154 CAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTCAATGTTCTTCCATC 213 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| |||||| | || || | ||| || || || || || || ||||| || Sbjct 214 TTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGAATACCCTCTTTATC 273 Query 139672 GGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||||| ||| | | ||| | ||||| | || || || || | || | | Sbjct 274 -CTGAATTTTTGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACTTCCAAAGTAATAG 332 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || || | ||||| || || |||||||| Sbjct 333 TTTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 >seq663341 Length=403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || |||| |||||| || | || || |||||||| ||||| || || || Sbjct 178 GCCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCACT 119 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||| || || || |||||| | || | | ||||||||||| || Sbjct 118 CAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGG 59 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTC 139704 |||||||||||||| |||||| ||||| | ||| | ||||| Sbjct 58 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCGATAGTGTC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485748621955200