Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1644865 282 4e-71 >seq1644865 Length=2180 Score = 282 bits (312), Expect = 4e-71 Identities = 507/736 (69%), Gaps = 6/736 (1%) Strand=Plus/Minus Query 13357 ATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCC 13416 ||||| || |||||||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 793 ATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTCCCTTCG 734 Query 13417 AGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACC 13475 || || ||||| ||||| || || || |||||| | || | | | || ||||| || Sbjct 733 AGGGAAATATTCTCCATGAAGTCTAAAGGATTT-TCAACTTTATAGTGCTTTTCACATCC 675 Query 13476 TAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATT 13535 | |||| ||| | |||||| || | ||| ||||| || || |||||| |||||| Sbjct 674 CAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTCATTAATGTACAATT 615 Query 13536 CATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGC 13595 ||| || ||||| || || | | || ||||| ||||||| ||| || || || || Sbjct 614 CATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGTTCAATTGAAACGGC 555 Query 13596 CTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAAT 13655 || | || || | | | | | || ||| ||| || ||||| ||||| || Sbjct 554 GTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACCAGATGCTTAAACAT 495 Query 13656 TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGT 13715 ||| ||||| ||||| |||||| || ||||| ||| ||||||||||| ||| || Sbjct 494 TAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGTTCGTTACTAAAAGT 435 Query 13716 TAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAA 13775 | ||||||||||| ||||| || || | |||||| || ||||| || ||||| || Sbjct 434 AAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCAAAAGATCCACTGAA 375 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||||| || ||||| | |||||||| | | || ||| | | || |||| || || Sbjct 374 AAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAAGAAGCTTCTTCATT 315 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| | |||||| || | ||| ||||| | | | | |||||||| || Sbjct 314 GCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGGAGAGTTTCGATGGC 255 Query 13896 ATTGAATAAAT--GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 || || | | ||| || ||||||| | || || || ||||| || ||||| ||| Sbjct 254 GTTAAAGAGTTTCGTT--TTTTCTTTAGGATCAGATATATAGGTATCGATCAGTAAACTA 197 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 ||||||||| ||| | |||||| || ||||| ||||| ||||| | || ||||| Sbjct 196 TACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAGAACCTTGCTTCA 137 Query 14014 GACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 | ||| | ||| | | || || || ||||||| || || ||||| ||||| Sbjct 136 GGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACAATTCCATCCGAT 77 Query 14074 GCTGCAAAAAATGCCA 14089 || ||||| ||||||| Sbjct 76 GCAGCAAAGAATGCCA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468636809127840