Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq252373 116 3e-21 seq678478 107 1e-18 seq1488354 100 2e-16 seq770237 89.7 4e-13 seq1135619 86.0 5e-12 >seq252373 Length=335 Score = 116 bits (128), Expect = 3e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| | || ||||| | ||| | ||| || || | |||||||||||||| ||| || Sbjct 38 AGTCTGAGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGACAGTGTTCGC 97 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || ||||| |||||||| ||||| |||||||||||||| || | || | |||||| Sbjct 98 CCATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATTCCTTCT 157 Query 43012 TTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCG 43069 || || ||| | | |||| || | ||| || || | ||||| || |||| | Sbjct 158 TTATC-TTGAATTTTAGCCTTT-ACATTTTCAATGGTATCACTTGCCTCAACCTCTAGAG 215 Query 43070 TTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| || || || | ||| || || ||||||||||| Sbjct 216 TTATAGTCTTCCCAGTCAAAGTCTTAACGAAAATTTGCAT 255 >seq678478 Length=406 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || ||||||| ||| ||| ||||| | ||||| || ||||||||| | || || Sbjct 207 ACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACTCAATGTACGACCATCTTCT 148 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||| || || ||||||||||||| ||||||||||| || | |||||||| || | Sbjct 147 AGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGGAATGCCTTCTTTGTCTTGG 88 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| ||| || || || | || || |||||| Sbjct 87 ATTTTAGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAACTTCGAGGGTGATTGTTTTT 28 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGC 43107 || || || ||||| || ||||||||| Sbjct 27 CCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq1488354 Length=939 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||| ||||| | || || ||||| | |||||| || | Sbjct 140 CCTCCCCTGAGCCTCAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTC 199 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | | || ||||||||||| || ||||| || | | ||||| || | || Sbjct 200 AATGTTCTTCCATCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGA 259 Query 43003 ACACCTTCTTTTTCGCTGATCAACT-CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| ||||| || |||| | ||||||| | | | ||||| || || || Sbjct 260 ATACCCTCTTTATC-CTGAATTTTTGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTAC 318 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || ||||||||||||||||||||||||||| Sbjct 319 TTCCAAAGTAATAGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCATT 367 Score = 89.7 bits (98), Expect = 4e-13 Identities = 141/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCG----TCGTCCAATTGTTTGCCGGC 42974 |||||||| | ||| ||||| || | | ||||| || || | |||||| || || Sbjct 404 TCCTTTTGAATATTATAATC--ACTAAG--CGTTCTGCCATCTTCTAGTTGTTTTCCAGC 459 Query 42975 AAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACT-CTTTGA 43033 |||||| |||| |||||| || | || | ||| ||||| || |||| | |||| | Sbjct 460 AAAAATTAATCTCTGTTGGTCTGGTGGAATACCCTCTTTATC-CTGAATTTTTGCTTTCA 518 Query 43034 CTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTT 43093 | | ||| |||||| || ||| || || | || ||||||||||| |||| || | Sbjct 519 CATTTTCAATTGTGTCTGAAGGCTCTACTTCCAAGGTGATAGTTTTTCCCGTTAAGGTCT 578 Query 43094 TCACAAAAATTTGCATT 43110 ||||||||||||||||| Sbjct 579 TCACAAAAATTTGCATT 595 >seq770237 Length=425 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 || ||||| ||||| | |||| || ||||| | |||||| || | ||||| | Sbjct 268 CTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACTGAGAGTACGCCCA 209 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || || | ||||| || ||||||||||| | || || || | || | ||||||||| Sbjct 208 TCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTTA 149 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || ||| | ||||| | ||| ||| || || ||| || |||| ||||| Sbjct 148 TCTTGAATCTTTGCCTTGACATTTTCAATTGTATCTGAAGGCTCAACTTCTAGTGTTATG 89 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT-CTTAATTTTA 43122 || || || || | |||||||||||| || |||||||| || || |||| Sbjct 88 GTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATTTTCCTGAAATTTA 40 >seq1135619 Length=547 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || || || ||||| | |||| ||||||||| | ||||| || | Sbjct 369 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 310 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || | || || | ||| || || ||||||||||||| ||| || || | || Sbjct 309 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 250 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | || || | ||| ||| || || || || Sbjct 249 ATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAACT 190 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| |||| ||||| ||||| |||||||| Sbjct 189 TCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCAT 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 373637488198248