Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1488354 161 7e-35 seq252373 140 2e-28 seq678478 131 1e-25 seq1135619 118 8e-22 seq1656961 100 2e-16 seq663341 96.9 2e-15 seq123891 93.3 3e-14 seq242576 87.8 1e-12 seq1605470 84.2 2e-11 >seq1488354 Length=939 Score = 161 bits (178), Expect = 7e-35 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || || |||||||||||||| || |||||||| || ||||| || || | |||| | Sbjct 152 CTCAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTCAATGTTCTTCCA 211 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| |||||||| ||||| |||| | | ||||||||| |||||| || ||||| Sbjct 212 TCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGAATACCCTCTTTA 271 Query 15269 T-CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 | | || ||||||| || ||| |||||||||| || | |||||| || || ||||| Sbjct 272 TCCTGAATTTTTGCT-TTGACATTTTCTATGGTGTCAGAAGGTTCTACTTCCAAAGTAAT 330 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || |||||||| |||||||||||||| Sbjct 331 AGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| | ||||| || ||||| || || ||||| || Sbjct 368 CCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACTA 427 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||||| |||||| ||||| | || || | |||||||| |||| Sbjct 428 AGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGGA 487 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || ||||| || |||||| ||| || ||| |||| || || || | ||||| Sbjct 488 ATACCCTCTTTATCCTGAATTTTTGCT-TTCACATTTTCAATTGTGTCTGAAGGCTCTAC 546 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || ||||| || || | || || |||||||||||||| Sbjct 547 TTCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCAT 594 >seq252373 Length=335 Score = 140 bits (154), Expect = 2e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||| | | ||| | |||||||| | || | ||||| || || ||||||||| Sbjct 29 CCACCTTTAAGTCTGAGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGAC 88 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| | | ||||| || ||||||||||| | ||||| || |||||||| ||| Sbjct 89 AGTGTTCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGA 148 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || |||||| ||||||| |||| |||||||| || || || Sbjct 149 ATTCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCACTTGCCTCAACC 208 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 |||| || || || || || |||| ||| || || ||||||||||| ||| || ||| Sbjct 209 TCTAGAGTTATAGTCTTCCCAGTCAAAGTCTTAACGAAAATTTGCATGATTGCAACTAAT 268 Query 15377 AT 15378 || Sbjct 269 AT 270 >seq678478 Length=406 Score = 131 bits (144), Expect = 1e-25 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | ||||||||| || ||||| |||||||| |||||||| || || Sbjct 225 CCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACTC 166 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| ||| || ||||| | ||||| | ||||| ||| |||| Sbjct 165 AATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGGA 106 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||||| ||| |||||| | || || || || | ||| || Sbjct 105 ATGCCTTCTTTGTCTTGGATTTTAGCT-TTTACATTCTCAATTGTGTCTGAAGCTTCAAC 47 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGC 15361 || | ||| || ||||| ||||| || ||||| || ||||||||| Sbjct 46 TTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq1135619 Length=547 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 369 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 310 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||| || ||||| | ||||| | || ||||| ||| Sbjct 309 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 250 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || ||||| ||| ||| |||| || ||||| | ||| || Sbjct 249 ATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAACT 190 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || ||||| || || || | ||||| ||||| ||||||||| Sbjct 189 TCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCATA 142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| | || || || || || || || ||||| |||||||||||||| Sbjct 141 CCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATCGCTA 82 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||| || ||||| | ||||| | || || ||| |||| Sbjct 81 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTGGA 22 Query 15257 ATTCCTTCTTTGTC 15270 || ||||||||||| Sbjct 21 ATGCCTTCTTTGTC 8 >seq1656961 Length=2936 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 15171 AATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15230 || |||| || ||||||||||| || ||| | | ||||| | |||||| || ||| Sbjct 2615 AACCTTTCTGGATGTTGTAATCAGAGAGGGTTCGCCCATCTTCAAGTTGTTTTCCTGCGA 2674 Query 15231 ATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAA 15290 | || || | ||||||||| || |||||||| || || ||||||| |||||| Sbjct 2675 AGATTAATCTTTGTTGGTCAGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACAT 2734 Query 15291 TTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15350 |||| || ||||| | || || || | |||||||||||||| || | ||||| | Sbjct 2735 TTTCAATAGTATCTGAAGCCTCAACTTCAAGAGTAATGGTTTTACCAGTTAACGTTTTAA 2794 Query 15351 CAAAAATTTGCAT 15363 |||| || ||||| Sbjct 2795 CAAAGATCTGCAT 2807 >seq663341 Length=403 Score = 96.9 bits (106), Expect = 2e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||| |||||||| | | ||||||||| || ||||| |||||||| |||||||| || | Sbjct 179 TGCCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAC 120 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | | | | | ||||||| ||| || ||||| | || || | || || ||| || Sbjct 119 TCAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGATCGGGTG 60 Query 15255 GAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATC 15303 |||| ||||||||||| ||||| ||| |||||| |||| || || || Sbjct 59 GAATGCCTTCTTTGTCTTGGATTTTAGCT-TTTACATTTTCGATAGTGTC 11 >seq123891 Length=317 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| |||| | | |||||| || ||| || |||||||| || |||||| | Sbjct 1 CCAGCAAATATAAGCCTTTGTTGATCTGGTGGGATACCTTCTTTATCCTGAATTTTTGCC 60 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| |||| |||||||| | |||||| || || || || |||||||| |||| Sbjct 61 TTTACATTTTCAATGGTATCAGAAGGTTCTACCTCCAAAGTTATAGTTTTACCAGTCAAT 120 Query 15344 GTTTTTACAAAAATTTGCATATTTGAAAATAAAATTTTAA 15383 || ||||||||||| ||||| | ||||| ||||| || Sbjct 121 GTCTTTACAAAAATCTGCATCT---GAAATACAATTTAAA 157 >seq242576 Length=334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | ||| | |||||| ||||| ||||||||||| || |||||||| Sbjct 185 CCTCCCCTCAACCGAAGAACAAGATGAAGCGTGGATTCTTTTTGTATATTATAATCGCTC 244 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | ||||| | |||||| ||||| |||| | | |||||| || ||| Sbjct 245 AATGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGCCTTTGTTGATCTGGTGGG 304 Query 15257 ATTCCTTCTTTGTCACAAATTTT 15279 || |||||||| || |||||| Sbjct 305 ATACCTTCTTTATCCTGAATTTT 327 >seq1605470 Length=1495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 154 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 95 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||| || ||||| | ||||| | || ||||| ||| Sbjct 94 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 35 Query 15257 ATTCCTTCTTTGTC 15270 ||||||||||| || Sbjct 34 ATTCCTTCTTTATC 21 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354836165666196