Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq678478 107 1e-18 seq1488354 98.7 6e-16 seq252373 95.1 8e-15 seq663341 93.3 3e-14 >seq678478 Length=406 Score = 107 bits (118), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| ||||||| || ||||| | ||| ||||||||||| || ||||| ||| Sbjct 226 ACCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACT 167 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | || || | |||||||||| ||| || || | || || || | || Sbjct 166 CAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGG 107 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | || |||||| | | ||| ||||| | || Sbjct 106 AATGCCTTCTTTGTCTTGGATTTTAGC---TTTTACATTCTCAATTGTGTCTGAAGCTTC 50 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGC 33367 ||| || || || || |||||||| ||||| ||||| |||||||||||| Sbjct 49 AACTTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq1488354 Length=939 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || || | || |||||| ||||| | || || |||||||| |||||||| ||| | Sbjct 140 CCTCCCCTGAGCCTCAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTC 199 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | || |||||||| |||||| |||||| | | ||| ||||| | || Sbjct 200 AATGTTCTTCCATCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGA 259 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || || ||||| || ||| ||| || ||| || ||||| |||| || Sbjct 260 ATACCCTCTTTATCCTGAATTTTTGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACT 319 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| ||| || ||||| || || |||||||| || ||||||||||| Sbjct 320 TCCAAAGTAATAGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 >seq252373 Length=335 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/220 (70%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TC 33216 || ||||| || || ||||||| || ||||||||||| |||| | ||| | || Sbjct 47 ACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGACA----GTGTTCGCCCATC 102 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| || || ||| ||| || || || || ||||| | ||| || |||||||| || Sbjct 103 TTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATTCCTTCTTTATC 162 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||| || || | | | ||| || |||||||| Sbjct 163 TTGAATTTTAGCCT---TTACATTTTCAATGGTATCACTTGCCTCAACCTCTAGAGTTAT 219 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || || || | ||| || ||||||||||||||| || Sbjct 220 AGTCTTCCCAGTCAAAGTCTTAACGAAAATTTGCATGATT 259 >seq663341 Length=403 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/232 (71%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 33146 CCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAA 33205 ||||| |||| || || ||||| | ||| || ||||| || ||||| || ||| | || Sbjct 402 CCTCTCAACCTCAGAACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCA--CTAA 345 Query 33206 TTGAGTTGGTC-ATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 |||| | | ||| ||| |||||||||| ||| ||||| | |||||||| | || Sbjct 344 --GAGTACGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGG 287 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || | | | || |||||| ||| || ||||| | || Sbjct 286 AATACCCTCTTTATCTTGGATTTTTGC---TTTTACATTTTCGATAGTGTCAGATGCTTC 230 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| || || || || ||||| |||||||||||||| || || ||||||||| Sbjct 229 AACCTCTAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCATG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 312314515257288