Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq770237 145 5e-30 seq1488354 131 1e-25 seq252373 107 1e-18 seq242576 105 5e-18 seq1135619 104 2e-17 seq1656961 102 6e-17 seq678478 87.8 1e-12 >seq770237 Length=425 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||| || ||||| ||||| || ||| |||||||| ||||| || || | Sbjct 281 ACCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACT 222 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | |||| |||| || | |||||||||||||| ||||||| ||||||||| | || Sbjct 221 GAGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGG 162 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| ||| ||||| | ||| ||||||| ||||| || Sbjct 161 GATACCTTCTTTATCTTGAATCTTTGCCTTGACATTTTCAATTGTATCTGAAGGCTCAAC 102 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || ||||| |||||||| || ||||| Sbjct 101 TTCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCAT 54 >seq1488354 Length=939 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| || | || ||||| ||||| || || |||||||||||||| || || | Sbjct 140 CCTCCCCTGAGCCTCAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTC 199 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| |||||||||||||| |||||||| | || ||| ||||| | || Sbjct 200 AATGTTCTTCCATCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGA 259 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| |||||||| ||||||| |||||| | | | || || | || || || Sbjct 260 ATACCCTCTTTATCCTGAATTTTTGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACT 319 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||||| |||| ||| |||||||| |||||||| Sbjct 320 TCCAAAGTAATAGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| ||||| | || | ||||| || ||| || |||||||| ||||| || Sbjct 596 CCTCCTCTTAATCTAAGAACAAGATGTAATGTAGACTCCTTCTGAATATTGTAATCACTT 655 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | | |||| ||||| ||||| |||||||| || | || ||| |||||| | || Sbjct 656 AATGTTCTCCCATCTTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGTTGGTCCGGTGGG 715 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||||| || || | ||| ||| |||| | || || Sbjct 716 ATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATAGTGTCTGAAGATTCTACT 775 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || |||||||| || ||||| || ||||| Sbjct 776 TCCAAAGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 822 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| || | | ||| | ||||| ||| || ||||||||||||||||| | Sbjct 368 CCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACTA 427 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| || | ||||||||| ||||| || || | || ||||| | || Sbjct 428 AGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGGA 487 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||| |||||||| ||||||| ||| || | ||| || |||| ||||| || Sbjct 488 ATACCCTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATTGTGTCTGAAGGCTCTACT 547 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || ||||| ||||||||||| |||||||| Sbjct 548 TCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCAT 594 >seq252373 Length=335 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||| | | ||| | || ||||||| || | |||||| |||||||| |||||| Sbjct 28 ACCACCTTTAAGTCTGAGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGA 87 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | ||| |||| ||||| ||||| || ||||| ||||| || || ||||| | || Sbjct 88 CAGTGTTCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGG 147 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||||||| |||||| || || | ||| ||||| | ||| || Sbjct 148 AATTCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCACTTGCCTCAAC 207 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || || || |||||||| || || ||||||||| Sbjct 208 CTCTAGAGTTATAGTCTTCCCAGTCAAAGTCTTAACGAAAATTTGCATG 256 >seq242576 Length=334 Score = 105 bits (116), Expect = 5e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 43939 AATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCG 43998 |||||| ||||| ||||| | | |||| ||||| ||||| |||||||| || | || Sbjct 1 AATATTGTAATCACTTAATGTTCTCCCATCTTCCAACTGTTTCCCTGCAAAGATAAGCCT 60 Query 43999 TTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGT 44058 ||| |||||| | || | |||||||||||| ||||||| || || | ||| ||| Sbjct 61 TTGTTGGTCCGGTGGGATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATAGT 120 Query 44059 ATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTG 44118 |||| || || || || | || || || || || |||||||| || ||||| || || Sbjct 121 GTCTGACGATTCTACTTCCAAAGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTG 180 Query 44119 CAT 44121 ||| Sbjct 181 CAT 183 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| ||||| | | || | ||| |||||| |||||||| |||||||||||| | Sbjct 185 CCTCCCCTCAACCGAAGAACAAGATGAAGCGTGGATTCTTTTTGTATATTATAATCGCTC 244 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| || | |||||| || |||||||| | || ||| || || | || Sbjct 245 AATGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGCCTTTGTTGATCTGGTGGG 304 Query 44015 ACACCTTCTTTAT-CTGAAATTTT 44037 | ||||||||||| ||||| |||| Sbjct 305 ATACCTTCTTTATCCTGAATTTTT 328 >seq1135619 Length=547 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||| || || || ||||| || ||| ||| ||||| || || || || | Sbjct 369 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 310 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | || |||| || | ||| ||||| ||||| ||||| | |||||||| | || Sbjct 309 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 250 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| || || | ||| ||||||| || || || Sbjct 249 ATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAACT 190 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || ||||| || || |||||||||||||| Sbjct 189 TCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCAT 143 >seq1656961 Length=2936 Score = 102 bits (112), Expect = 6e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43961 CGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCT 44020 ||| |||| || | |||||||||||| || || || | ||| ||||| |||| | ||| Sbjct 2647 CGCCCATCTTCAAGTTGTTTTCCTGCGAAGATTAATCTTTGTTGGTCAGGAGGGATTCCT 2706 Query 44021 TCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACC 44080 || |||||| |||||| ||| || | ||| |||||||| | ||| || || | Sbjct 2707 TCCTTATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCTGAAGCCTCAACTTCAAGA 2766 Query 44081 GTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| |||||||| ||||| || || ||||| || ||||| Sbjct 2767 GTAATGGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 2807 >seq678478 Length=406 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||||||| | | || ||||| || ||| ||||||||| || || || || | Sbjct 226 ACCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACT 167 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || | ||| ||||| ||||| ||||| | || || || | || Sbjct 166 CAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGG 107 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||||| ||| || | ||| || |||| | || || Sbjct 106 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAAC 47 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGC 44119 |||| || |||||||| || || | || || || || |||||| Sbjct 46 TTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347584630062288