Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1644865 289 2e-73 >seq1644865 Length=2180 Score = 289 bits (320), Expect = 2e-73 Identities = 514/740 (69%), Gaps = 10/740 (1%) Strand=Plus/Minus Query 12847 CATAACAG-ACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTT 12905 ||||||| |||||||| ||||||| | ||||| || ||||| || || ||||| |||| Sbjct 794 CATAACACCACATTTTT-GATATTCACCTACTCTCTTCTCAAAGAAATTAGTTTTCCCTT 736 Query 12906 CTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTTTTACA 12963 | | |||||||| ||||| || || |||||||||| ||| ||||| |||| ||| Sbjct 735 CGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTC--AACTTTATAGTGCTTTTCACA 678 Query 12964 CCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACA 13023 || || |||| ||| | ||| || || ||||| || ||||||||||||||||| ||| Sbjct 677 TCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTCATTAATGTACA 618 Query 13024 GTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAAC 13083 |||||||| |||| || |||| || |||||||| || | || ||| || ||| Sbjct 617 ATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGTTCAATTGAAAC 558 Query 13084 TGCTTCGATAACTATGTCTCTTATTACGTTCTCTAAT-GGAGGATTTGATAGATGCTTAA 13142 || || ||| ||| || | | | ||| || | || ||| |||||||||| Sbjct 557 GGCGTCTGTAATTATTTCCGTGAC-AGTTTCCTTACTAGGTTTATTAACCAGATGCTTAA 499 Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 |||| | || || ||||| || | |||||||| ||| ||| || ||||| || Sbjct 498 ACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGTTCGTTACTAA 439 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG 13262 | || || || ||||| || |||| || || | |||||| ||||||||||| || || Sbjct 438 AAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCAAAAGATCCAC 379 Query 13263 aaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTT 13321 |||||||| |||||||| | |||||||| | |||| ||||| | || | | | | Sbjct 378 TGAAAAATATCCCTTCAACAGAGGCAAACGC-AACAACTCTTTCGGCGTAAGAAGCTTCT 320 Query 13322 TTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCT 13381 | | | | ||||| | ||||||| ||||| | ||| || || | | |||| Sbjct 319 TCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGGAGAGTTTCG 260 Query 13382 ATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAG 13441 || |||||||| | | ||||||| ||| || | ||||| ||||| |||| ||| Sbjct 259 ATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCGATCAGTAAA 200 Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||||||||| |||| ||||| ||| || |||||||| ||||| | || || Sbjct 199 CTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAGAACCTTGCT 140 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 || | || |||| || | | || || || | ||||| ||||| || || || || Sbjct 139 TCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACAATTCCATCC 80 Query 13562 CTAGCAGCaaaaaaaGCAAG 13581 |||||||| || || || Sbjct 79 GATGCAGCAAAGAATGCCAG 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422244409081512