Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1175516 86.0 3e-12 seq1142739 86.0 3e-12 seq1539311 84.2 1e-11 seq927729 82.4 4e-11 seq359511 82.4 4e-11 >seq1175516 Length=568 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| || |||||||||| ||||| ||||||||||||||| |||||| |||| Sbjct 5 ATTGGCCCGTGTGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGGCGCTCTAACCA 64 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 65 ACTGAGCTAACAGGCC 80 >seq1142739 Length=551 Score = 86.0 bits (94), Expect = 3e-12 Identities = 77/95 (81%), Gaps = 7/95 (7%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCC--ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||||| |||||| ||| || ||||||| |||||| |||||||| ||| Sbjct 198 AAAAAAAAATCA---TGGCCCGCATGGGAG--TCGAACCCACGACCTCCGCGTTATCAGC 252 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||| |||||| |||||||||||||| ||||| ||| Sbjct 253 ACGGCGCTCTAACCAACTGAGCTAACGGGCCATCG 287 >seq1539311 Length=1108 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | ||| |||||| || |||||||||| ||||| ||||||||||||||| || Sbjct 781 AAAAACTAATATGGCCCGTGTGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGGCG 840 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 841 CTCTAACCAACTGAGCTAACAGGCC 865 Score = 84.2 bits (92), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | ||| |||||| || |||||||||| ||||| ||||||||||||||| || Sbjct 1026 AAAAACTAATATGGCCCGTGGGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGGCG 967 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 966 CTCTAACCAACTGAGCTAACAGGCC 942 >seq927729 Length=466 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||| |||| || |||||||||| ||||| ||||||||||||||| |||||| ||| Sbjct 271 AATTAGCCCGTGTGGGGATCGAACCCAAGACCTCCGCGTTATTAGCACGGCGCTCTAACC 330 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 331 AACTGAGCTAACAGGCC 347 >seq359511 Length=351 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||| ||||||||||||||| |||||| |||||||||||||| ||| Sbjct 7 GGATCGAACCCAAGACCTCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACGGG 66 Query 11528 CC 11529 || Sbjct 67 CC 68 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 256189573458256