Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq770237 145 7e-30 seq1488354 131 1e-25 seq663341 125 6e-24 seq1135619 116 3e-21 seq678478 111 1e-19 seq242576 102 7e-17 seq1605470 95.1 1e-14 seq1656961 93.3 4e-14 >seq770237 Length=425 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || |||||||| | |||||| || |||| ||| ||||| ||||| | || | Sbjct 288 TTTGCATACCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGT 229 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || || | ||| |||||| ||||||||||| |||| || || |||||||| | Sbjct 228 AGTCACTGAGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGT 169 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || ||||||||||| || | ||| ||||||||||| | | || || | Sbjct 168 CTGGTGGGATACCTTCTTTATCTTGAATCTTTGCCTTGACATTTTCAATTGTATCTGAAG 109 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || ||||| || ||||| | ||||||||||||||||||||| Sbjct 108 GCTCAACTTCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCAT 54 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 ||||| |||| |||||||| |||||||| || ||||| ||||||||||| | ||||| Sbjct 424 TTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGGATTTTA 365 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | ||||| | || || |||| |||||||| || ||||| Sbjct 364 GCCTTAACATTCTCAATCGTGTCTGATGCTTCAACTTCAAGGGTGATGGTCTTACCAGTC 305 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||||||| ||||| Sbjct 304 AAAGTTTTCACAAAGATTTGCAT 282 >seq1488354 Length=939 Score = 131 bits (144), Expect = 1e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| ||||| || || | ||| | || || || ||||||||||| | Sbjct 355 AAAAATTTGCATTCCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGAAT 414 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||| || | || || ||| || || |||||||| |||| |||||||| || Sbjct 415 ATTATAATCACTAAGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTG 474 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| |||||||| ||||| || | ||||||||| || || | | ||||| Sbjct 475 TTGGTCTGGTGGAATACCCTCTTTATCCTGAATTTTTGCTTTCACATTTTCAATTGTGTC 534 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| |||||||| || | || |||||||| || ||||| Sbjct 535 TGAAGGCTCTACTTCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCAT 594 Score = 131 bits (144), Expect = 1e-25 Identities = 175/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCA 94826 |||| ||| || ||||||||| |||| || | |||| || || ||||| ||||| || | Sbjct 583 AAAAATTTGCATTCCTCCTCTTAATCT-AAGAACAAGATGTAATGTAGACTCCTTCTGAA 641 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| || | || | ||| |||| |||||| || ||||||| | |||| Sbjct 642 TATTGTAATCACTTAATGTTCTCCCATCTTCCAACTGTTTCCCTGCAAAGATAAGCCTTT 701 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | || || || || ||||||||||| || | |||||||||||| || | | ||||| Sbjct 702 GTTGGTCCGGTGGGATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATAGTGT 761 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | || || || | || ||||| |||||||| | |||||| ||||||||||||| Sbjct 762 CTGAAGATTCTACTTCCAAAGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCA 821 Query 95007 T 95007 | Sbjct 822 T 822 Score = 125 bits (138), Expect = 6e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 |||| ||| | ||||| || | | |||||| || || | |||||||| ||||| | Sbjct 128 AAATATTAAAACCCTCCCCTGAGCCTCAACACTAAATGAAGGGTAGATTCTTTTTGAATA 187 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || |||| || | ||| |||| |||||||| |||| || | ||||| Sbjct 188 TTGTAGTCACTCAATGTTCTTCCATCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGT 247 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| |||||||| ||||| || | ||||||||| ||||| | | |||||| Sbjct 248 TGGTCTGGTGGAATACCCTCTTTATCCTGAATTTTTGCTTTGACATTTTCTATGGTGTCA 307 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | || || ||||| ||||| |||||||||||||| || ||||| Sbjct 308 GAAGGTTCTACTTCCAAAGTAATAGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 >seq663341 Length=403 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94783 TCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCAT 94842 ||||||||| | || || || || | || ||||| || || | ||||| || || | Sbjct 403 TCCTCTCAACCTCAGAACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCACTAAG 344 Query 94843 AGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAAT 94902 ||| ||| || || || ||||| |||| |||||||| ||||| ||||| ||||| Sbjct 343 AGTACGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAAT 284 Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 ||| ||||| || | |||||||| || || ||| |||||||| || || || Sbjct 283 ACCCTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATAGTGTCAGATGCTTCAACCTC 224 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || ||||| || |||||||||||||||||||| ||||||| Sbjct 223 TAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCATGC 177 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| |||| || || || | || ||||| ||||| | ||| | Sbjct 185 TTTGCATGCCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGATTCTTTTTGGATGTTGT 126 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || |||| ||| || ||| || || || ||||| |||| |||||||| ||||| Sbjct 125 AGTCACTCAA--TGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATTAATCTCTGCTG 68 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||| || ||||| ||||||||||| | ||||| || || || Sbjct 67 ATCGGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTAC 26 >seq1135619 Length=547 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||||| | ||| || || || | ||| || |||||||| | ||| || || || Sbjct 370 TCCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACT 311 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | ||||| || ||| || || || ||||| |||| || ||||| ||||| ||||| Sbjct 310 C--AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGT 253 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || |||||||| || | ||||| ||||| || | | || || | | || Sbjct 252 GGGATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCA 193 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| |||||||| |||||||| | ||||| ||||| || ||||| Sbjct 192 ACTTCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCAT 143 Score = 114 bits (126), Expect = 1e-20 Identities = 122/158 (77%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 |||||| |||| ||| || ||||||||||||| | |||||||| | |||||||| Sbjct 163 GGTTTTGACAAATATTTGCATACCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTC 104 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAG 94876 |||||| | ||| |||||||| | |||| || ||| || || || ||||| |||| Sbjct 103 CTTTTGGATGTTGTAATCGCTAA--GTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAA 46 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 || ||||| |||||||| || ||||| ||||||||||| Sbjct 45 ATCAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTC 8 >seq678478 Length=406 Score = 111 bits (122), Expect = 1e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || || | |||| ||| || || || ||||| |||| |||||||| ||| Sbjct 405 TTATAGTCACTAAGAGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGC 346 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| |||||||| ||||| || | |||||||| || || ||| ||||||| Sbjct 345 TGGTCTGGTGGAATACCCTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATAGTGTCA 286 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || ||||| || |||||||||||||||||||| ||||| Sbjct 285 GATGCTTCAACCTCTAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCAT 227 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/235 (70%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| |||| || || || | || || || ||||| | ||| | Sbjct 233 TTTGCATACCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGT 174 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || |||| ||| || ||| || || || ||||| |||| || ||||| || || Sbjct 173 AGTCACTCAA--TGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTG 116 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || ||||| ||||||||||| | ||||| || || || | | ||||| | Sbjct 115 ATCGGGTGGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTCTCAATTGTGTCTGA 56 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || || | ||||| |||||||| ||||| ||||| || || || ||| Sbjct 55 AGCTTCAACTTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq242576 Length=334 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| |||||| || ||||||| | ||||| || || || || ||||||||||| Sbjct 28 ATCTTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGTTGGTCCGGTGGGATACCTTCTTT 87 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||||||||| || | | |||||| | || || || | || || Sbjct 88 ATCCTGAATTTTTGCCTTAACATTTTCAATAGTGTCTGACGATTCTACTTCCAAAGTTAT 147 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||||||| | |||||| |||||||||||||| Sbjct 148 GGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 183 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||| ||||| || || | |||| || | || ||||| ||||| | ||||||||||| Sbjct 185 CCTCCCCTCAACCG-AAGAACAAGATGAAGCGTGGATTCTTTTTGTATATTATAATCGCT 243 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | ||| || || ||||| || |||| || | ||||| |||||||| || Sbjct 244 CAATGTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGCCTTTGTTGATCTGGTGG 303 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTT 94929 ||||||||||| || | |||||||||||| Sbjct 304 GATACCTTCTTTATCCTGAATTTTTGCCTT 333 >seq1605470 Length=1495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||||| | ||| || || || | ||| || |||||||| | ||| || || || Sbjct 155 TCCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACT 96 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | ||||| || ||| || || || ||||| |||| || ||||| ||||| ||||| Sbjct 95 C--AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGT 38 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || || |||||||| || | ||||| ||||| || Sbjct 37 GGGATTCCTTCTTTATCTTGGATTTTAGCCTTAAC 3 >seq1656961 Length=2936 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || |||||||| | |||||||||||||| || || ||||| || ||||| || Sbjct 2652 ATCTTCAAGTTGTTTTCCTGCGAAGATTAATCTTTGTTGGTCAGGAGGGATTCCTTCCTT 2711 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| || || || | | ||| || | || || |||| || || Sbjct 2712 ATCTTGAATTTTGGCTTTTACATTTTCAATAGTATCTGAAGCCTCAACTTCAAGAGTAAT 2771 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| | ||||| |||||||||||||| Sbjct 2772 GGTTTTACCAGTTAACGTTTTAACAAAGATCTGCAT 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438969231056160