Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1644865 322 6e-83 seq1277878 86.0 8e-12 >seq1644865 Length=2180 Score = 322 bits (356), Expect = 6e-83 Identities = 551/798 (69%), Gaps = 6/798 (1%) Strand=Plus/Minus Query 32989 TCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 33045 ||||||| || |||||| || |||||| |||||||| || | || || || ||| Sbjct 808 TCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAA 749 Query 33046 TTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 33105 |||||||| ||||| | || ||||| |||||||| || || ||||| ||| ||||| Sbjct 748 TTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAG 689 Query 33106 AtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTC 33165 |||| | ||||||| || | | |||||| ||||| ||||| || || |||| Sbjct 688 TGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTC 629 Query 33166 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGT 33225 || | | |||||||||||| || || ||| || | || | || | ||||||||| Sbjct 628 ATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGT 569 Query 33226 TCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAAT 33285 ||||| || || || ||||| || || | || ||||| | ||| ||| || | Sbjct 568 TCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACC 509 Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 | ||| |||||||| || || ||||||||| || ||||| || || ||| || ||| Sbjct 508 AGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGT 449 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 ||||| ||| || ||||| ||||| || || | ||| || |||||||| || | ||| Sbjct 448 TCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCA 389 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || |||||| || || || ||||| || | ||||| |||| || ||| || | ||| Sbjct 388 AAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAA 329 Query 33466 CCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 || |||| ||||| | |||||| ||||| |||||||| ||||| || Sbjct 328 GAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGG 269 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 | ||||| ||||| |||||||| | ||||||| ||| ||| | ||| |||||| Sbjct 268 AGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCG 209 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 |||| | |||||||||||| |||| |||||| || ||||| || ||||| || Sbjct 208 ATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAG 149 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACT 33702 | || || || | || || | ||| || || | ||| |||| || || || || Sbjct 148 AACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACA 89 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33762 ||||| || || ||||| || |||| ||||| || |||| ||| ||||| Sbjct 88 ATTCCATCCGATGCAGCAAAGAATGCCAGAACATGGGAGATGAAATGACGTTCATCTGGC 29 Query 33763 GTTAGTTTATTCCAATCA 33780 ||||| ||||||||| Sbjct 28 TGAAGTTTGTTCCAATCA 11 >seq1277878 Length=636 Score = 86.0 bits (94), Expect = 8e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 63151 CCCAAACATT-GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCA 63209 ||| |||||| |||||| ||| |||||| ||||||||||| |||||||| | || Sbjct 255 CCCCAACATTCGTCCAAATTCGGAGATTCATGAGGACACATCAAACACCACTCTGCATCC 314 Query 63210 TCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTT 63269 | || |||| | ||| || || |||||||||||||| || ||| |||||||| | | Sbjct 315 TGCTCGACTCTCTCCATGAATAGGTCAGGAATCCAAAGGGCGTAAAACAGATCTCTCGCT 374 Query 63270 CTATGTTCCTCGTT 63283 || | ||| || || Sbjct 375 CTTTCTTCTTCCTT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609993355596960