Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1644865 304 2e-77 >seq1644865 Length=2180 Score = 304 bits (336), Expect = 2e-77 Identities = 547/798 (69%), Gaps = 6/798 (1%) Strand=Plus/Minus Query 32346 TCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 32402 ||||||| || |||||| || |||||| |||||||| || | || || || ||| Sbjct 808 TCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAA 749 Query 32403 TTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAA 32462 |||||||| ||||| | || ||||| |||||||| || || ||||| ||| ||||| Sbjct 748 TTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAG 689 Query 32463 AtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTC 32522 |||| | ||||||| || | | |||||| ||||||||||| || || |||| Sbjct 688 TGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTC 629 Query 32523 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGT 32582 || | | |||||||||||| || || ||| || | || | || | ||||||||| Sbjct 628 ATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGT 569 Query 32583 TCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAAT 32642 ||||| || || |||||||| || || | || ||||| | ||| ||| || | Sbjct 568 TCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACC 509 Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 | ||| |||||||| || || ||||||||| || ||||| || || ||| || | | Sbjct 508 AGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGT 449 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 ||||| ||| || ||||| ||||| || || | ||| || |||||||| || | ||| Sbjct 448 TCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCA 389 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || |||||| || || || ||||| || | ||||| |||| || ||| || | ||| Sbjct 388 AAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAA 329 Query 32823 CCGGCGCTGTCAT---GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 || |||| ||||| | |||||| ||||| |||||||| ||||| || Sbjct 328 GAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGG 269 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 | || || || || |||||||| | ||||||| ||| ||| | ||| ||||| Sbjct 268 AGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCG 209 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 |||| | |||||||||||| |||| |||||| || || || || ||||| ||| Sbjct 208 ATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAG 149 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 | || || || | || || | ||| || || | || | || || || || || Sbjct 148 AACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACA 89 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGT 33119 ||||| || || ||||| || |||| ||||| || |||| ||| ||||| Sbjct 88 ATTCCATCCGATGCAGCAAAGAATGCCAGAACATGGGAGATGAAATGACGTTCATCTGGC 29 Query 33120 GTTAGTTTATTCCAATCA 33137 ||||| ||||||||| Sbjct 28 TGAAGTTTGTTCCAATCA 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620455971057600