Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1488354 165 7e-36 seq1135619 145 6e-30 seq770237 138 1e-27 seq678478 138 1e-27 seq663341 138 1e-27 seq252373 129 5e-25 seq1605470 120 3e-22 seq242576 113 4e-20 seq1656961 84.2 2e-11 >seq1488354 Length=939 Score = 165 bits (182), Expect = 7e-36 Identities = 177/232 (76%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || |||||| | || || | ||||| || | || Sbjct 367 AATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTC 308 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| || || |||| ||||||||| ||| || ||||| || |||||||| | Sbjct 307 TGACACCATAGAAAATGTCA---AAGCAAAAATTCAG-GATAAAGAGGGTATTCCACCAG 252 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || |||| ||||| || |||||||| ||||||| | || || | || | Sbjct 251 ACCAACAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACT 192 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||||||| || || ||||||||| | ||||| || ||||| Sbjct 191 ACAATATTCAAAAAGAATCTACCCTTCATTTAGTGTTGAGGCTCAGGGGAGG 140 Score = 152 bits (168), Expect = 4e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| || || || ||| | ||||| | ||||| ||| | || Sbjct 595 AATGCAAATTTTTGTGAAGACCTTAACGGGAAAAACTATCACCTTGGAAGTAGAGCCTTC 536 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| ||||||| ||| || ||||| || |||||||| |||| Sbjct 535 AGACACAATTGAAAATGTGAAAGCAAAAATTCAG-GATAAAGAGGGTATTCCACCAGACC 477 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||| | | |||||||| || |||||| ||||||||| | || | | ||||| | Sbjct 476 AACAGAGATTAATTTTTGCTGGAAAACAACTAGAAGATGGCAGAACGCTTAGTGATTATA 417 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||| |||||||| ||||| | ||||| | ||||||| |||| Sbjct 416 ATATTCAAAAGGAATCCACATTACATCTTGTGCTTCGTTTAAGAGGTGGAA 366 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| || || || |||| || | ||||| || || || Sbjct 822 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCTTCA 763 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||||| ||| || |||||||| || ||||| ||||| Sbjct 762 GACACTATTGAAAATGTTAAGGCAAAAATTCAG-GATAAAGAAGGTATCCCACCGGACCA 704 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || ||||| || ||||||| | || | | |||||||| Sbjct 703 ACAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAA 644 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || || || || ||||| | || || || |||||||||||| Sbjct 643 TATTCAGAAGGAGTCTACATTACATCTTGTTCTTAGATTAAGAGGAGGAA 594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25110 CCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC 25169 || || ||||| || |||| ||||| || |||||| | ||||||| | | || || || Sbjct 939 CCAGATCAACAAAGGCTTATATTTGCTGGTAAACAACTTGAAGATGGTAGAACATTGAGC 880 Query 25170 GATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||||||||||||||| ||| | || || || | || ||||| Sbjct 879 GATTATAATATACAAAAAGAATCCACGCTTCATCTTGTTCTTCGGTTGAGGGGAGG 824 >seq1135619 Length=547 Score = 145 bits (160), Expect = 6e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || || || || || ||||||| | ||||| || | || Sbjct 143 ATGCAAATATTTGTCAAAACCTTAACTGGAAAGACCATCACTCTTGAAGTTGAACCTTCA 202 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| |||||| || |||||||| || ||||| ||||| Sbjct 203 GATACAATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGAATCCCACCAGACCAG 262 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | |||||||| || || ||| | ||||||| |||||| || | || ||||| Sbjct 263 CAGAGATTGATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACACTGAGTGACTACAAC 322 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || ||||| || ||||| || |||||||| | ||||| |||||||||||||| Sbjct 323 ATCCAAAAGGAGTCCACTCTTCATTTAGTATTGAGGCTGAGAGGAGGAAATTA 375 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| |||||||| || || ||| | | |||||||| || || ||| | ||| Sbjct 8 GACAAAGAAGGCATTCCACCCGATCAGCAGAGATTGATTTTTGCTGGAAAGCAACTTGAA 67 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| |||||| | |||||||||| || ||||| ||||| ||||| || || || || Sbjct 68 GATGGTCGCACACTTAGCGATTACAACATCCAAAAGGAATCTACGCTCCACTTGGTACTT 127 Query 25212 AGGCTAAGAGGAGG 25225 || | |||||||| Sbjct 128 AGATTGAGAGGAGG 141 >seq770237 Length=425 Score = 138 bits (152), Expect = 1e-27 Identities = 175/237 (74%), Gaps = 9/237 (4%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| |||||| || ||||| || |||||||| || || |||| ||| | ||||| ||| Sbjct 49 GGAA-AATGCAGATCTTTGTGAAAACTTTGACTGGGAAGACCATAACACTAGAAGTTGAG 107 Query 25053 TCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCC 25108 | || || || || || |||| | ||||| | ||| || |||||||| || || Sbjct 108 CCTTCAGATACAATTGAAAATGTCA---AGGCAAAGATTCAA-GATAAAGAAGGTATCCC 163 Query 25109 ACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGG 25168 ||| ||||| || || | |||||||| || ||||| | || |||| || ||| | | Sbjct 164 ACCAGACCAGCAAAGGTTGATTTTTGCAGGAAAACAGCTTGAGGATGGGCGTACTCTCAG 223 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| |||||||||||||| || ||||||||| | ||| | ||||| || Sbjct 224 TGACTACAATATCCAAAAAGAATCCACTCTGCATTTAGTGTTGAGGTTGAGAGGGGG 280 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||| ||||| ||||||| | ||||| || | || Sbjct 282 ATGCAAATCTTTGTGAAAACTTTGACTGGTAAGACCATCACCCTTGAAGTTGAAGCATCA 341 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||||||||| |||||||| || || Sbjct 342 GACACGATTGAGAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAG 401 Query 25119 CAGCGGATTATTTTTGCCGGCAA 25141 ||| | | |||||||| || || Sbjct 402 CAGAGATTAATTTTTGCTGGAAA 424 >seq678478 Length=406 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 25001 GCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGA 25060 |||||| || || || || | || || ||| | ||||| ||||||| || | || || Sbjct 1 GCAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGA 60 Query 25061 CACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || ||| | || |||| |||| || ||||||||||| |||||||| || || Sbjct 61 CACAATTGAG--AATGTAAAAGCTAAAATCCAA-GACAAAGAAGGCATTCCACCCGATCA 117 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | |||||||| || || ||| ||||||||| ||| || || | || ||||| Sbjct 118 ACAGAGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAA 177 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || |||||||| || || | |||||||| Sbjct 178 CATCCAAAAAGAGTCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGG 225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/168 (74%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| | || || | || || || | ||| Sbjct 227 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTGAAGCATCT 286 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| ||||||| || ||||| || |||||||| ||| Sbjct 287 GACACTATCGA--AAATGTAAAAGC-AAAAATCCAAGATAAAGAGGGTATTCCACCAGAC 343 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 || ||| | | |||||||| || || ||| | ||||||| ||||||| Sbjct 344 CAGCAGAGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACT 391 >seq663341 Length=403 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||| | || || ||| | || || | || || || | ||| Sbjct 179 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTGAAGCATCT 238 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| ||||||| || ||||| || |||||||| ||| Sbjct 239 GACACTATCGA--AAATGTAAAAGC-AAAAATCCAAGATAAAGAGGGTATTCCACCAGAC 295 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | |||||||| || || ||| | ||||||| ||| ||| | | || || Sbjct 296 CAGCAGAGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGTACTCTTAGTGACTAT 355 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGA 25223 ||||| || ||||||||||| || |||||||| || ||| | |||||| Sbjct 356 AATATCCAGAAAGAATCCACACTCCATTTAGTTCTGAGGTTGAGAGGA 403 Score = 120 bits (132), Expect = 3e-22 Identities = 132/173 (76%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || ||||||||||| | || |||| |||| || ||||||||||| |||||||| Sbjct 8 TCAGACACTATCGAA--AATGTAAAAGCTAAAATCCAA-GACAAAGAAGGCATTCCACCC 64 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||| | | |||||||| || || ||| ||||||||| ||| || || | || Sbjct 65 GATCAGCAGAGATTAATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGAC 124 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||||||||| || |||||||| || || | |||||||| Sbjct 125 TACAACATCCAAAAAGAATCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGG 177 >seq252373 Length=335 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | || || | || || ||| | | Sbjct 255 ATGCAAATTTTCGTTAAGACTTTGACTGGGAAGACTATAACTCTAGAGGTTGAGGCAAGT 196 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | |||| ||| || |||||||| ||||| |||||||| Sbjct 195 GATACCATTGAAAATGTAAAGGCTAAAATTCAA-GATAAAGAAGGAATTCCCCCTGACCA 137 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| |||||||| || ||||||| || || || ||||||||| Sbjct 136 ACAGCGATTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGAACACTGTCCGATTACAA 77 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| ||||| | || |||||||||| || || || | ||| || Sbjct 76 TATTCAGAAAGAGTGTACTTTACATTTAGTACTCAGACTTAAAGGTGG 29 >seq1605470 Length=1495 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 |||||| || |||||||| || ||||| ||||| ||| | | |||||||| || || Sbjct 12 AAAATCCAAGATAAAGAAGGAATCCCACCAGACCAGCAGAGATTGATTTTTGCTGGAAAG 71 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| |||||| || | || ||||| || ||||| || ||||| || ||| Sbjct 72 CAACTTGAAGATGGTCGCACACTGAGTGACTACAACATCCAAAAGGAGTCCACTCTTCAT 131 Query 25203 TTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||||| | ||||| |||||||||||||| Sbjct 132 TTAGTATTGAGGCTGAGAGGAGGAAATTA 160 >seq242576 Length=334 Score = 113 bits (124), Expect = 4e-20 Identities = 114/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 ||||||| ||| || |||||||| || ||||| || ||||| || |||| ||||| || Sbjct 330 GCAAAAATTCAG-GATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGG 272 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 |||||| | ||||||| | | || || ||||||| ||||| ||||||||||||||||| Sbjct 271 TAAACAACTTGAAGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCT 212 Query 25199 ACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| | || || || | || ||||| Sbjct 211 TCATCTTGTTCTTCGGTTGAGGGGAGG 185 Score = 109 bits (120), Expect = 5e-19 Identities = 136/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| || || || |||| || | ||||| || ||||| Sbjct 183 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCGTCA 124 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| || | ||| |||||| ||| || |||||||| || ||||| ||||| Sbjct 123 GACACTATTGAAAATGTTAAGGCAAAAATTCAG-GATAAAGAAGGTATCCCACCGGACCA 65 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || ||||| || ||||||| | || | | |||||||| Sbjct 64 ACAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAA 5 Query 25178 TATT 25181 |||| Sbjct 4 TATT 1 >seq1656961 Length=2936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || || || |||||| |||| || | ||||| ||| | || Sbjct 2807 ATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACCATTACTCTTGAAGTTGAGGCTTCA 2748 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || || ||||| || || |||||| Sbjct 2747 GATACTATTGAA--AATGTAAAAGCCAAAATTCAA-GATAAGGAAGGAATCCCTCCTGAC 2691 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || || || || |||||| | ||||||| || || | |||||| Sbjct 2690 CAACAAAGATTAATCTTCGCAGGAAAACAACTTGAAGATGGGCGAACCCTCTCTGATTAC 2631 Query 25176 AATATTCAAAAAG 25188 || || || |||| Sbjct 2630 AACATCCAGAAAG 2618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424542453006140