Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1488354 125 6e-24 seq242576 96.9 3e-15 seq678478 87.8 1e-12 >seq1488354 Length=939 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| ||||| | || || ||||| ||||| ||||| ||||| Sbjct 367 AATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTC 308 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | | | | || ||| ||||||| || ||||| || |||| || || Sbjct 307 TGACACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 248 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||||||| | ||| || ||||||||||||||| | ||| || || || || Sbjct 247 ACAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAA 188 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| |||||||||||||| || |||||||||||| Sbjct 187 TATTCAAAAAGAATCTACCCTTCATTTAGTGTTG 154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||||||||||||||| | ||| || |||||| | |||||| || ||| || |||| Sbjct 936 GATCAACAAAGGCTTATATTTGCTGGTAAACAACTTGAAGATGGTAGAACATTGAGCGAT 877 Query 111361 TATAATATACAAAAAGAATCTACACTACAT 111390 |||||||||||||||||||| || || ||| Sbjct 876 TATAATATACAAAAAGAATCCACGCTTCAT 847 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||||||||| || || | || || ||||| || ||| ||||| || || Sbjct 595 AATGCAAATTTTTGTGAAGACCTTAACGGGAAAAACTATCACCTTGGAAGTAGAGCCTTC 536 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | || ||| ||||||| || ||||| || |||| || || Sbjct 535 AGACACAATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 476 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 ||| || | |||| ||| || |||||| | |||||| | ||| | |||||||| Sbjct 475 ACAGAGATTAATTTTTGCTGGAAAACAACTAGAAGATGGCAGAACGCTTAGTGATTATAA 416 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| ||||| ||||| ||| ||||| | ||| | ||| | | ||||| Sbjct 415 TATTCAAAAGGAATCCACATTACATCTTGTGCTTCGTTTAAGAGGTGG 368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||||||||| | || || || ||||| || ||||| ||| | Sbjct 822 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCTTCA 763 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || || ||||||| || |||||||| | || || ||| Sbjct 762 GACACTATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATCCCACCGGACCAA 703 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||||||||| | ||| || ||||| ||||||||| | ||| | ||||| ||| Sbjct 702 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAAT 643 Query 111367 ATACAAAAAGAATCTACACTACAT 111390 || || || || |||||| ||||| Sbjct 642 ATTCAGAAGGAGTCTACATTACAT 619 >seq242576 Length=334 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 111270 AAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAA 111329 ||||||| || |||||||| | || ||||||||||||||||| | ||| || || Sbjct 328 AAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGGTAA 269 Query 111330 ACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACA 111389 |||| | |||||| || ||| || |||||||||||||||||||||||| || || || Sbjct 268 ACAACTTGAAGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCTTCA 209 Query 111390 T 111390 | Sbjct 208 T 208 >seq678478 Length=406 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 111189 GCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGA 111248 ||||||||| |||||||| | || || ||||| || ||| | ||| ||| | || Sbjct 1 GCAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGA 60 Query 111249 TTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACA 111308 | ||| | |||||| ||||| |||||||||||| |||| ||||||||| Sbjct 61 CACAATTGAGAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAACA 120 Query 111309 AAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATAT 111368 || | |||| ||| || || ||| | |||||| | || || || || || || Sbjct 121 GAGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAACAT 180 Query 111369 ACAAAAAGAATCTACACTACATTTAGTGTTGCG 111401 |||||||| || ||||| |||||||| |||| Sbjct 181 CCAAAAAGAGTCCACACTCCATTTAGTTCTGCG 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414463037975200