Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1488354 125 5e-24 seq1135619 109 4e-19 seq1605470 82.4 5e-11 seq242576 82.4 5e-11 >seq1488354 Length=939 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || |||||||| ||||| || ||| ||||| || | | Sbjct 595 AATGCAAATTTTTGTGAAGACCTTAACGGGAAAAACTATCACCTTGGAAGTAGAGCCTTC 536 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | || ||||||| |||||||||||| | || | |||| Sbjct 535 AGACACAATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 476 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||| | || |||||||| ||||||||||||||| | ||| | ||||| || Sbjct 475 ACAGAGATTAATTTTTGCTGGAAAACAACTAGAAGATGGCAGAACGCTTAGTGATTATAA 416 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||| |||||||| || | ||| | || | |||||| |||| ||| Sbjct 415 TATTCAAAAGGAATCCACATTACATCTTGTGCTTCGTTTAAGAGGTGGA 367 Score = 122 bits (134), Expect = 6e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | ||||| |||| || ||||| ||||| ||||| ||| | | Sbjct 367 AATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTC 308 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||||| |||||||||||| | || | |||| Sbjct 307 TGACACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 248 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || ||||| |||||||| |||||| | |||||| || ||| || || ||||| Sbjct 247 ACAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAA 188 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATA 22069 |||||| || |||||||| |||||| | || || | | | ||||| | |||||| Sbjct 187 TATTCAAAAAGAATCTACCCTTCATTTAGTGTTGAGGCTCAGGGGAGGGTTTTAATA 131 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| ||||| || || ||||| || ||||| ||| | || Sbjct 822 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCTTCA 763 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||||| |||||||| ||| | || ||||| Sbjct 762 GACACTATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATCCCACCGGACCAA 703 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || ||||| | |||||| | ||| | ||||||||| Sbjct 702 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAAT 643 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| ||||| | ||| | || | | ||| |||||||| Sbjct 642 ATTCAGAAGGAGTCTACATTACATCTTGTTCTTAGATTAAGAGGAGGA 595 >seq1135619 Length=547 Score = 109 bits (120), Expect = 4e-19 Identities = 190/275 (69%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| ||||| || || ||||| || | ||| ||| | || Sbjct 143 ATGCAAATATTTGTCAAAACCTTAACTGGAAAGACCATCACTCTTGAAGTTGAACCTTCA 202 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||| |||||||| || | || | |||| Sbjct 203 GATACAATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGAATCCCACCAGACCAG 262 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | || |||||||| || ||||| |||||| || || || ||||| Sbjct 263 CAGAGATTGATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACACTGAGTGACTACAAC 322 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAATAA 22073 || || ||||| || ||||||||| | ||||| | | |||||||| |||||| | | Sbjct 323 ATCCAAAAGGAGTCCACTCTTCATTTAGTATTGAGGCTGAGAGGAGGAAATTAATGA-AT 381 Query 22074 AAACCATAAATATACATTAAATTTTTTATTTAATT 22108 | | ||| ||| || ||||||||||||||| Sbjct 382 ATTTTTTTAATGTACTTTCTATTTTTTATTTAATT 416 >seq1605470 Length=1495 Score = 82.4 bits (90), Expect = 5e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 |||||||| || | || | |||| |||||| | || |||||||| || ||||| ||| Sbjct 21 GATAAAGAAGGAATCCCACCAGACCAGCAGAGATTGATTTTTGCTGGAAAGCAACTTGAA 80 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || || || ||||| || || ||||| || ||||||||| | ||||| Sbjct 81 GATGGTCGCACACTGAGTGACTACAACATCCAAAAGGAGTCCACTCTTCATTTAGTATTG 140 Query 22047 CGTTTACGAGGAGGATATTAATAATAAAAACCATAAATATACATTAAATTTTTTATTTAA 22106 | | |||||||| |||||| | | | | ||| ||| || ||||||||||||| Sbjct 141 AGGCTGAGAGGAGGAAATTAATGA-ATATTTTTTTAATGTACTTTCTATTTTTTATTTAA 199 Query 22107 TT 22108 || Sbjct 200 TT 201 >seq242576 Length=334 Score = 82.4 bits (90), Expect = 5e-11 Identities = 128/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| ||||| || || ||||| || ||||| ||| | || Sbjct 183 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACTTTGGAAGTAGAATCGTCA 124 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || ||||| ||||||| |||||||| ||| | || ||||| Sbjct 123 GACACTATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATCCCACCGGACCAA 64 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||||||||| || ||||| | |||||| | ||| | ||||||||| Sbjct 63 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAAGATGGGAGAACATTAAGTGATTACAAT 4 Query 22014 ATT 22016 ||| Sbjct 3 ATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350863966958824