Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq252373 147 2e-30 seq770237 138 1e-27 seq1135619 120 3e-22 seq678478 102 8e-17 seq1656961 95.1 1e-14 seq1605470 91.5 1e-13 seq1488354 91.5 1e-13 seq663341 87.8 2e-12 >seq252373 Length=335 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || |||| ||| | || | ||||| ||||| |||||||| | | || ||| | Sbjct 40 TCTGAGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGACAGTGTTCGCCC 99 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | ||| ||||| ||| | || | ||||| ||||| || |||||||||||||| Sbjct 100 ATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATTCCTTCTTT 159 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| ||||| ||||||| || | ||||||| || || || |||| ||||| Sbjct 160 ATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCACTTGCCTCAACCTCTAGAGTTAT 219 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || |||||||| || |||||||||||||| Sbjct 220 AGTCTTCCCAGTCAAAGTCTTAACGAAAATTTGCAT 255 >seq770237 Length=425 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| || | ||||| ||| | || ||||||||||| || ||||| || Sbjct 281 ACCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACT 222 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || ||| | || |||||||| || || ||| |||| | || |||||||| || || Sbjct 221 GAGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGG 162 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| ||||| || ||| ||| ||| || | |||||| | || || Sbjct 161 GATACCTTCTTTATCTTGAATCTTTGCCTTGACATTTTCAATTGTATCTGAAGGCTCAAC 102 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| |||||| || ||||||||||| || || || |||||||| Sbjct 101 TTCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATTTT 51 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| |||| | | |||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 425 CTTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGGATTTT 366 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| ||| | || || || || ||||| | || | |||||| || || Sbjct 365 AGCCTTAACATTCTCAATCGTGTCTGATGCTTCAACTTCAAGGGTGATGGTCTTACCAGT 306 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| || || |||||||| Sbjct 305 CAAAGTTTTCACAAAGATTTGCAT 282 >seq1135619 Length=547 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || || || ||||| |||||||| || | ||||| | |||||| Sbjct 351 ACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTCAGTGTGCGACCATCTTCA 292 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || ||| |||| | | ||||||||| || || ||||||||||| ||||| Sbjct 291 AGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGGATTCCTTCTTTATCTTGG 232 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 ||||| ||| ||| || | |||||| | || ||||| | ||| | |||||| Sbjct 231 ATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAACTTCAAGAGTGATGGTCTTT 172 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| || || |||||||| Sbjct 171 CCAGTTAAGGTTTTGACAAATATTTGCAT 143 Score = 107 bits (118), Expect = 2e-18 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||||||| || | || | ||| ||||| ||||| ||||||||||| || Sbjct 142 ACCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATC-GC 84 Query 64276 GACG-GTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | | ||||| | |||||||| ||||| || ||| |||| | | |||||| ||||| | Sbjct 83 TAAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTG 24 Query 64335 GAATTCCTTCTTTTTCTTGTATT 64357 |||| |||||||| ||||| ||| Sbjct 23 GAATGCCTTCTTTGTCTTGGATT 1 >seq678478 Length=406 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || |||| ||| | || || |||||||| |||||||| || Sbjct 226 ACCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACT 167 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || ||||| || ||| |||| | | ||| || ||||| || Sbjct 166 CAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGG 107 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| |||||||| ||||| ||||| |||||| ||| | ||| || || || || Sbjct 106 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAAC 47 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGC 64441 ||| | || | || || || || | ||||| |||||||||||| Sbjct 46 TTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq1656961 Length=2936 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| || ||||||||||| | || ||| ||| | |||||||| || || || || | | Sbjct 2618 CTTTCTGGATGTTGTAATCAGAGAGGGTTCGCCCATCTTCAAGTTGTTTTCCTGCGAAGA 2677 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | | | || ||||| ||||| |||||||| || ||||| ||||| |||||| | Sbjct 2678 TTAATCTTTGTTGGTCAGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTACATTTT 2737 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | ||||| || || ||||| | ||| | ||| || || || || ||||| || | Sbjct 2738 CAATAGTATCTGAAGCCTCAACTTCAAGAGTAATGGTTTTACCAGTTAACGTTTTAACAA 2797 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 2798 AGATCTGCAT 2807 >seq1605470 Length=1495 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || || || ||||| |||||||| || | ||||| | |||||| Sbjct 136 ACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTCAGTGTGCGACCATCTTCA 77 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || ||||| || ||| |||| | | ||||||||| || || ||||||||||| ||||| Sbjct 76 AGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGGATTCCTTCTTTATCTTGG 17 Query 64355 ATTTT 64359 ||||| Sbjct 16 ATTTT 12 >seq1488354 Length=939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| ||||| || |||||||||||||| ||||| || | || | | ||||| Sbjct 157 CACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTCAATGTTCTTCCATCTTC 216 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || || ||| | || |||| || ||||| || ||||| || ||||| || || Sbjct 217 CAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGAATACCCTCTTTATCCTG 276 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 |||||| ||||| ||| || | || ||| | || ||||| | ||| | || | Sbjct 277 AATTTTT-GCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACTTCCAAAGTAATAGTTT 335 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || | |||||| || |||||||||||| Sbjct 336 TACCAGTTAGAGTTTTCACAAAAATTTGCATT 367 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || ||||| |||||||| || ||||| | || | | || Sbjct 382 AAGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACTAAGCGTTCTGCCATC 441 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || || ||| |||| | | ||| ||||| || ||||| || ||||| || Sbjct 442 TTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGGAATACCCTCTTTATC 501 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || |||||| ||||| ||| || | ||| || | || ||||| | || | | Sbjct 502 CTGAATTTTT-GCTTTCACATTTTCAATTGTGTCTGAAGGCTCTACTTCCAAGGTGATAG 560 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || || || || || || |||||||||||| Sbjct 561 TTTTTCCCGTTAAGGTCTTCACAAAAATTTGCATT 595 >seq663341 Length=403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || ||||||||||| |||||||| || | || || | ||| Sbjct 162 AGAACTAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCACTCAATGTACGACCATCT 103 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| || ||| |||| | | |||||| ||||| ||||| |||||||| ||| Sbjct 102 TCTAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTCT 43 Query 64352 TGTATTTT 64359 || ||||| Sbjct 42 TGGATTTT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 489254961188640