Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1488354 125 2e-23 seq1135619 104 5e-17 seq663341 102 2e-16 seq770237 87.8 4e-12 seq678478 87.8 4e-12 >seq1488354 Length=939 Score = 125 bits (138), Expect = 2e-23 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || ||||| | ||||||||| ||| || ||||||||||||| || Sbjct 164 TGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTCAATGTTCTTCCATCTTCCAATTGT 223 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || || || || | || ||||| || ||| || ||| |||||||| ||| Sbjct 224 TTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGAATACCCTCTTTATCCTGAAT-TTT 282 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || ||| | |||||| | | |||||| ||||| || || || ||||| || Sbjct 283 TGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACTTCCAAAGTAATAGTTTTACCAGT 342 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||||||||||||||||| Sbjct 343 TAGAGTTTTCACAAAAATTTG 363 Score = 102 bits (112), Expect = 2e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || | || || |||||||| | || || ||| | || || |||||| Sbjct 383 AGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACTAAGCGTTCTGCCATCT 442 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||| || || || | | ||| ||||| || ||| || ||| ||| Sbjct 443 TCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGGAATACCCTCTTTATCC 502 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||||| ||| ||| | ||||||| | ||||| ||||| ||||| || Sbjct 503 TGAAT-TTTTGCTTTCACATTTTCAATTGTGTCTGAAGGCTCTACTTCCAAGGTGATAGT 561 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| | || |||||||||||||| Sbjct 562 TTTTCCCGTTAAGGTCTTCACAAAAATTTG 591 >seq1135619 Length=547 Score = 104 bits (114), Expect = 5e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| |||||||||| || || | |||||||| || ||| Sbjct 345 TGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTCAGTGTGCGACCATCTTCAAGTTGC 286 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || || || | | ||||||||| || ||||||||| || || || || Sbjct 285 TTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGGATTCCTTCTTTATCTTGGATTTTA 226 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | || |||| | ||| || || | ||||| ||||| || || Sbjct 225 GCCTTAACATTTTCAATTGTATCTGAAGGTTCAACTTCAAGAGTGATGGTCTTTCCAGTT 166 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| ||||| Sbjct 165 AAGGTTTTGACAAATATTTG 146 >seq663341 Length=403 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 ||||| || | ||||| || || || || |||| || |||||| | ||| | ||| Sbjct 393 CTCAGAACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCACTAAGAGTACGACCA 334 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| || |||||||| || || || | | ||||||||| || ||| || ||| Sbjct 333 TCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAATACCCTCTTTA 274 Query 199535 TCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || || |||||||| || ||||| ||||| | || ||| || || | || || Sbjct 273 TCTTGGAT-TTTTGCTTTTACATTTTCGATAGTGTCAGATGCTTCAACCTCTAGGGTAAT 215 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||||||||| ||||| Sbjct 214 AGTTTTCCCCGTAAGAGTTTTCACAAAGATTTG 182 >seq770237 Length=425 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || ||||||| ||||||||| | ||| | ||||| || ||||| Sbjct 256 TGCAGAGTGGATTCTTTTTGGATATTGTAGTCACTGAGAGTACGCCCATCCTCAAGCTGT 197 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| || || || | | |||||||| || || |||||| || ||||||||| Sbjct 196 TTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGAATCTTT 137 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | || |||| | || || || | || || ||||| || || Sbjct 136 GCCTTGACATTTTCAATTGTATCTGAAGGCTCAACTTCTAGTGTTATGGTCTTCCCAGTC 77 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTT 199635 | |||||||||||| || || |||||| Sbjct 76 AAAGTTTTCACAAAGATCTG---CATTTT 51 >seq678478 Length=406 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 199451 TTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGC 199510 || |||||| | ||| | |||||||| || |||||||| || || || | | |||| Sbjct 405 TTATAGTCACTAAGAGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGC 346 Query 199511 TGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTC 199569 ||||| || ||| || ||| || || || |||||||| || ||||| ||||| Sbjct 345 TGGTCTGGTGGAATACCCTCTTTATCTTGGAT-TTTTGCTTTTACATTTTCGATAGTGTC 287 Query 199570 TGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || ||| || || | || || || || ||||| |||||||||||||| ||||| Sbjct 286 AGATGCTTCAACCTCTAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153793698078252