Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1644865 302 5e-77 seq829224 93.3 5e-14 seq509544 82.4 8e-11 >seq1644865 Length=2180 Score = 302 bits (334), Expect = 5e-77 Identities = 556/810 (69%), Gaps = 4/810 (0%) Strand=Plus/Minus Query 18633 AAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTT 18692 ||||| ||||||| | ||| |||| || || |||||||||||| | ||||| || Sbjct 818 AAAAGTTCTCTCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTT 759 Query 18693 TTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTTTT 18752 ||||||||||||||||| || || | || ||| ||||| || || || ||||||| Sbjct 758 CTCAAAGAAATTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTC 699 Query 18753 TACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAAT 18812 || ||||| |||| |||| || |||| || |||||||| || ||||||| ||| Sbjct 698 AACTTTATAGTGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAAT 639 Query 18813 ATA-TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAA 18871 || ||| ||||| | |||||||||||| |||| ||| || | ||||||||| | Sbjct 638 GTACTGT-TTCATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTA 580 Query 18872 GAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAG 18931 ||||||||||| || || || |||| || || || | || | | ||| Sbjct 579 AGAATTCTTGTTCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAG 520 Query 18932 GAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTC 18991 | | | ||||| |||||||| || || || ||||| ||| || || || || | Sbjct 519 GTTTATTAACCAGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCC 460 Query 18992 TACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGA 19051 || ||| | ||| ||| ||| || | || |||||||||||||| || || | ||| | Sbjct 459 TAGATATAAGTTCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAA 400 Query 19052 ATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTC 19111 | |||| |||||| |||||| || ||||| ||||| || | ||||| ||||| | || Sbjct 399 AAATAGCAGCAAAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTC 340 Query 19112 TTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTT 19171 |||| | ||| ||| || | ||| |||||| | ||||| || || ||||||| Sbjct 339 TTTCGGCGTAAGAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTT 280 Query 19172 TTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAA 19231 | |||||||| | || || || | ||||| || | | | || | | ||| | Sbjct 279 TGACACATGGGAGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATA 220 Query 19232 CATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAA 19291 ||| | ||| |||| |||||| |||||||| |||| ||||| || ||||| | Sbjct 219 TATAGGTATCGATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGA 160 Query 19292 ATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAAT 19351 | |||||||| | |||||||| | | || | || || || || || ||||| | Sbjct 159 AACCGTAAAAGAACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGT 100 Query 19352 TTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTT 19411 | || || || |||||||| || ||||| ||||| | ||||| || ||||| Sbjct 99 TCTCGTTGACAATTCCATCCGATGCAGCAAAGAATGCCAGAACATGGGAGATGAAATGAC 40 Query 19412 TTTCATCTGAGGTTAA-TGTATTCCAATCA 19440 |||||||| | | || | | ||||||||| Sbjct 39 GTTCATCTG-GCTGAAGTTTGTTCCAATCA 11 >seq829224 Length=439 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||||||| ||||||||||| |||||||||||| ||||| || ||||| || Sbjct 260 TTGGATAAATCAACTTCTTCAACAACCCAAAAAGAAGCTAAAGCTTTCTTGTACATTTTA 201 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 ||||||| ||||| || || ||||| ||||| | |||| ||||||||| | || Sbjct 200 AATATATCTGGATATCTGATGGGGAATATTACAAAACGATTTGGATTTTCTTTCAAAAGG 141 Query 19570 GGTTCC 19575 |||||| Sbjct 140 GGTTCC 135 >seq509544 Length=375 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || | || || | | || | ||||| |||| Sbjct 273 TCCAGCCATAGAAATGCATGGAGGTGAGCTTCCTATGATTTGGCGACGCTATATGTATAT 214 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || ||||||||||| || || || ||||| || || ||||| || |||| ||| Sbjct 213 TGAGCGACTGACTCTGATCTATGAAAGCTCCTCTGTCGGCAGCCATCTCCAAAACTACCT 154 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 |||| || |||||||| ||||| || || Sbjct 153 TTTGGGGAATCTCCCACACTGTCTTGTA 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 550420056663840