Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1488354 185 7e-42 seq1135619 163 2e-35 seq663341 158 9e-34 seq678478 152 4e-32 seq770237 149 5e-31 seq1656961 132 4e-26 seq242576 123 2e-23 seq123891 114 1e-20 seq252373 98.7 7e-16 seq1626314 91.5 1e-13 >seq1488354 Length=939 Score = 185 bits (204), Expect = 7e-42 Identities = 182/230 (79%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 |||||||| | | || ||| |||||||| || |||||||||||||| || || || | | Sbjct 140 CCTCCCCTGAGCCTCAACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTC 199 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | ||| || | |||||| |||||| |||| | ||||| || || || || Sbjct 200 AATGTT-CTTCCATCTTCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGG 258 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||||||| || || |||||||| ||||||| |||||| ||||||||| |||||| Sbjct 259 AATACCCTCTTTATCCTG-AATTTTTGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTA 317 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | ||| |||||||| ||||||| ||||| ||||| || |||||| Sbjct 318 CTTCCAAAGTAATAGTTTTACCAGTTAGAGTTTTCACAAAAATTTGCATT 367 Score = 165 bits (182), Expect = 6e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || || ||||| ||||| | ||| | |||||||| |||||||| |||||||| Sbjct 367 TCCACCTCTTAAACGAAGCACAAGATGTAATGTGGATTCCTTTTGAATATTATAATCACT 426 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || | ||| || |||||||| |||||| | || ||||| || || || || || Sbjct 427 AAGCGTTCTGCCATCTTCTAGTTGTTTTCCAGCAAAAATTAATCTCTGTTGGTCTGGTGG 486 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||||||| || || |||||||| ||| ||| |||| | ||||| ||| | |||| Sbjct 487 AATACCCTCTTTATCCTG-AATTTTTGCTTTCACATTTTCAATTGTGTCTGAAGGCTCTA 545 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| | || |||||||| || |||||||| || ||||| || |||||| Sbjct 546 CTTCCAAGGTGATAGTTTTTCCCGTTAAGGTCTTCACAAAAATTTGCATT 595 Score = 100 bits (110), Expect = 2e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||||||||| || || || | ||||||||||||||||||||| || |||||||| | | Sbjct 824 CCTCCCCTCAACCGAAGAACAAGATGAAGCGTGGATTCTTTTTGTATATTATAATCGCTC 883 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 ||| || | | ||| || |||||||| |||||| |||| | ||||| ||||| || Sbjct 884 AAT-GTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGCCTTTGTTGATCTGG 939 >seq1135619 Length=547 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 |||||| |||| | || || |||||||| ||||| || ||||| ||||| || || | Sbjct 370 TCCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACT 311 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 || || ||||| ||| || ||||| || |||||| | |||||||| ||||| || || | Sbjct 310 CAGTG-TGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTG 252 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 | || || ||||| ||||| | ||| || ||| |||| | || || ||| |||| | Sbjct 251 GGATTCCTTCTTTATCTTGGATTTTAGCCTTAACATTTTCAATTGTATCTGAAGGTTCAA 192 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| || || || |||||||||||||| |||||||| ||||| Sbjct 191 CTTCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCAT 143 Score = 116 bits (128), Expect = 3e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| ||||| | || ||||| || ||||| ||||| ||||| ||||| ||||| | Sbjct 141 CCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATCGCTA 82 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || ||||| || |||||| | |||||||| |||||||| || ||| Sbjct 81 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTGGA 22 Query 29680 ATACCCTCTTTGTCTTG 29696 || || ||||||||||| Sbjct 21 ATGCCTTCTTTGTCTTG 5 >seq663341 Length=403 Score = 158 bits (174), Expect = 9e-34 Identities = 170/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 29562 TCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAAT 29621 ||| ||||| | ||| || ||||| || ||||||||||| || || ||||| || || Sbjct 403 TCCTCTCAACCTCAGAACTAAATGGAGTGTGGATTCTTTCTGGATATTATAGTCACTAAG 344 Query 29622 GGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAAT 29681 || ||| ||| || ||||| || |||||| | || ||||| ||||| || || ||||| Sbjct 343 AGTACGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAAT 284 Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||||||||| ||||| | |||| ||| ||| |||| | ||||||||| ||| || || Sbjct 283 ACCCTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATAGTGTCAGATGCTTCAACCTC 224 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || | ||||| ||||| || ||||| Sbjct 223 TAGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCAT 179 Score = 136 bits (150), Expect = 3e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| ||||| ||||| || ||||| || |||||||||||||| ||||| || || | | Sbjct 177 CCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCACTC 118 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | ||| ||| || ||||| || |||||| | || ||||| |||||||| || || Sbjct 117 AATG-TACGACCATCTTCTAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGG 59 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAA 29730 ||| || ||||||||||| | ||| ||| ||| |||| | |||||| ||| Sbjct 58 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTTTCGATAGTGTCTGAA 7 >seq678478 Length=406 Score = 152 bits (168), Expect = 4e-32 Identities = 171/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || || | | Sbjct 225 CCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACTC 166 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | ||| ||| || ||||| || |||||| | |||||||| || ||||| || || Sbjct 165 AATG-TACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGG 107 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||||||||| | ||| ||| ||| | || | ||||| ||| ||| || Sbjct 106 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAAC 47 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 ||| || || || ||||| || || | |||||| || || || ||| Sbjct 46 TTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 |||||| ||| || ||||| || |||||| | || ||||| ||||| || || |||||| Sbjct 390 GTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCTGGTGGAATA 331 Query 29683 CCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCA 29742 |||||||| ||||| | |||| ||| ||| |||| | ||||||||| ||| || || Sbjct 330 CCCTCTTTATCTTGGATTTTTGCTTTTACATTTTCGATAGTGTCAGATGCTTCAACCTCT 271 Query 29743 AGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || |||||||| || || | ||||| ||||| || ||||| Sbjct 270 AGGGTAATAGTTTTCCCCGTAAGAGTTTTCACAAAGATTTGCAT 227 >seq770237 Length=425 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||| ||||| || |||||||||||||| || || || || Sbjct 280 CCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACTG 221 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || ||||| || ||| | ||||| |||||||| || || || Sbjct 220 AGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGGG 161 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| ||| |||| |||||| |||| | || || ||| | || || Sbjct 160 ATACCTTCTTTATCTTG-AATCTTTGCCTTGACATTTTCAATTGTATCTGAAGGCTCAAC 102 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || ||||| || || ||||| || ||||| ||||| ||||||||||| Sbjct 101 TTCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCATTTT 51 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || ||||| |||||||| || ||||| || ||||||||||| | ||| Sbjct 424 TTTCCAGCAAAAATTAATCTCTGCTGATCGGGTGGAATGCCTTCTTTGTCTTGGATTTTA 365 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | ||||| || ||| |||||||| || || || || ||||| Sbjct 364 GCCTTAACATTCTCAATCGTGTCTGATGCTTCAACTTCAAGGGTGATGGTCTTACCAGTC 305 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 || ||||| ||||| || ||||| Sbjct 304 AAAGTTTTCACAAAGATTTGCAT 282 >seq1656961 Length=2936 Score = 132 bits (146), Expect = 4e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656 |||| || ||||| ||||| | | ||| || ||| || |||||||| || || | | Sbjct 2618 CTTTCTGGATGTTGTAATCAGAGAGGGTTCGCCCATCTTCAAGTTGTTTTCCTGCGAAGA 2677 Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTT 29715 | |||||||| || || || || || || || || ||||| |||||| | ||| ||| || Sbjct 2678 TTAATCTTTGTTGGTCAGGAGGGATTCCTTCCTTATCTTG-AATTTTGGCTTTTACATTT 2736 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | ||| || ||| || ||||||||||| || ||||| |||||||| ||||||||| Sbjct 2737 TCAATAGTATCTGAAGCCTCAACTTCAAGAGTAATGGTTTTACCAGTTAACGTTTTAACA 2796 Query 29776 AATATCTGCATTTTAAA 29792 || |||||||| | ||| Sbjct 2797 AAGATCTGCATCTGAAA 2813 >seq242576 Length=334 Score = 123 bits (136), Expect = 2e-23 Identities = 118/147 (80%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||||||||| || || || | ||||||||||||||||||||| || |||||||| | | Sbjct 185 CCTCCCCTCAACCGAAGAACAAGATGAAGCGTGGATTCTTTTTGTATATTATAATCGCTC 244 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 ||| || | | ||| || |||||||| |||||| |||| | ||||| ||||| || || Sbjct 245 AAT-GTTCTACCATCTTCAAGTTGTTTACCAGCAAATATAAGCCTTTGTTGATCTGGTGG 303 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG 29705 ||||| ||||| || || |||||||| Sbjct 304 GATACCTTCTTTATCCTG-AATTTTTG 329 >seq123891 Length=317 Score = 114 bits (126), Expect = 1e-20 Identities = 115/147 (78%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| |||| | ||||| ||||| || || ||||| ||||| || || |||||||| Sbjct 1 CCAGCAAATATAAGCCTTTGTTGATCTGGTGGGATACCTTCTTTATCCTG-AATTTTTGC 59 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| |||| | || |||||| ||||||| || | |||||||||||| ||||| || Sbjct 60 CTTTACATTTTCAATGGTATCAGAAGGTTCTACCTCCAAAGTTATAGTTTTACCAGTCAA 119 Query 29766 GGTTTTAACAAATATCTGCATTTTAAA 29792 || || ||||| |||||||| | ||| Sbjct 120 TGTCTTTACAAAAATCTGCATCTGAAA 146 >seq252373 Length=335 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || ||||| | || | ||||| ||||| || ||||| | | || || ||| Sbjct 44 AGTACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGACAGTGTTCGCCCATCT 103 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | |||||||||||| | ||||||| || || || || ||||| || ||||| ||| Sbjct 104 TCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATTCCTTCTTTATCT 163 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||| | || ||| |||| | || ||| || || || ||||||||||| Sbjct 164 TG-AATTTTAGCCTTTACATTTTCAATGGTATCACTTGCCTCAACCTCTAGAGTTATAGT 222 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || ||||| || || ||||| Sbjct 223 CTTCCCAGTCAAAGTCTTAACGAAAATTTGCAT 255 >seq1626314 Length=1748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29682 ACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 ||| ||||||||||||| ||| |||||| |||||| |||||||| || || || Sbjct 265 ACCTTCTTTGTCTTGTATTTTGGCCTTGACATTTTCTATTGTGTCAGAGGCCTCAACCTC 206 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||| || || || || | |||||||||||| |||||||| || Sbjct 205 AAGAGTTATGGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATCTT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377409039141396