Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1135619 109 4e-19 seq770237 100 2e-16 seq678478 96.9 2e-15 seq252373 96.9 2e-15 seq1605470 89.7 3e-13 seq1488354 89.7 3e-13 seq1656961 86.0 4e-12 >seq1135619 Length=547 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| | || || ||||| |||||| ||| ||||| |||||||| || Sbjct 369 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 310 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | ||| ||||| ||||||||||| | |||||| ||| | || Sbjct 309 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 250 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || ||||| | | ||||| || | || || | ||| || Sbjct 249 ATTCCTTCTTTATCTTGGATTTT-AGCCTTAACATTTTCAATTGTATCTGAAGGTTCAAC 191 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || ||||| ||||| ||||| || |||||| Sbjct 190 TTCAAGAGTGATGGTCTTTCCAGTTAAGGTTTTGACAAATATTTGCATA 142 Score = 91.5 bits (100), Expect = 9e-14 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | | ||||| || || || || ||||| |||||||||||| Sbjct 142 ACCTCCTCTCAATCTAAGTACCAAGTGGAGCGTAGATTCCTTTTGGATGTTGTAATCGCT 83 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | ||| ||||| ||||||||||| | ||||||||| | || Sbjct 82 AAGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCGGGTGG 23 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 22 AATGCCTTCTTTGTC 8 >seq770237 Length=425 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | ||||| ||||| |||||| |||||||| || ||||| || Sbjct 281 ACCCCCTCTCAACCTCAACACTAAATGCAGAGTGGATTCTTTTTGGATATTGTAGTCACT 222 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || || | |||||||| ||||||||||| | ||||| ||| | || Sbjct 221 GAGAGTACGCCCATCCTCAAGCTGTTTTCCTGCAAAAATCAACCTTTGCTGGTCTGGTGG 162 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||| || || | |||| || | || || | || | Sbjct 161 GATACCTTCTTTATCTTGAATCTT-TGCCTTGACATTTTCAATTGTATCTGAAGGCTCAA 103 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || || ||||| |||||||||||||| Sbjct 102 CTTCTAGTGTTATGGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCAT 54 >seq678478 Length=406 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| || | || ||||| || ||| ||||||||| |||||||| || Sbjct 226 ACCTCCTCTCAACCGCAGAACTAAATGGAGTGTGGACTCTTTTTGGATGTTGTAGTCACT 167 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || | ||| ||||| ||||||||||| | ||| ||||| | || Sbjct 166 CAATGTACGACCATCTTCTAGTTGCTTTCCAGCAAAAATCAATCTCTGTTGATCGGGTGG 107 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | || |||| || | ||||| | ||| | Sbjct 106 AATGCCTTCTTTGTCTTGGATTTT-AGCTTTTACATTCTCAATTGTGTCTGAAGCTTCAA 48 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGC 33747 | || | ||||| ||||| ||||| | ||||| || || || ||| Sbjct 47 CTTCGAGGGTGATTGTTTTTCCTGTAAGGGTTTTGACGAAAATTTGC 1 >seq252373 Length=335 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||||| ||| | |||||| || || ||||||||||| ||||| || | || ||| Sbjct 47 ACTAAATGTAAAGTACACTCTTTCTGAATATTGTAATCGGACAGTGTTCGCCCATCTTCC 106 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || ||||| || ||||| ||||| ||||| || || | || | |||||||| || | Sbjct 107 AACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGA 166 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | ||| || |||| || || || | || || || || Sbjct 167 ATTTT-AGCCTTTACATTTTCAATGGTATCACTTGCCTCAACCTCTAGAGTTATAGTCTT 225 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || || || ||||| Sbjct 226 CCCAGTCAAAGTCTTAACGAAAATTTGCAT 255 >seq1605470 Length=1495 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| | || || ||||| |||||| ||| ||||| |||||||| || Sbjct 154 CCTCCTCTCAGCCTCAATACTAAATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCACTC 95 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | ||| ||||| ||||||||||| | |||||| ||| | || Sbjct 94 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGG 35 Query 33643 ACACCTTCTTTGTC 33656 | |||||||| || Sbjct 34 ATTCCTTCTTTATC 21 >seq1488354 Length=939 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||| ||||| || || |||||||| || ||||| || | ||| | | | || Sbjct 155 AACACTAAATGAAGGGTAGATTCTTTTTGAATATTGTAGTCACTCAATGTTCTTCCATCT 214 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||||||||||||| ||||| || | | || || ||| | || | ||| ||||| || Sbjct 215 TCCAATTGTTTTCCAGCAAATATAAGCCTTTGTTGGTCTGGTGGAATACCCTCTTTATCC 274 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| || || |||| || | |||||| | ||| || || | || || || Sbjct 275 TGAATTTT-TGCTTTGACATTTTCTATGGTGTCAGAAGGTTCTACTTCCAAAGTAATAGT 333 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||| |||| ||||| ||||| || ||||| Sbjct 334 TTTACCAGTTAGAGTTTTCACAAAAATTTGCAT 366 >seq1656961 Length=2936 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||||||||| ||||| || || | || || | ||||||||| || || | Sbjct 2618 CTTTCTGGATGTTGTAATCAGAGAGGGTTCGCCCATCTTCAAGTTGTTTTCCTGCGAAGA 2677 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | || | || || || | || | ||||| || || |||||| ||| | ||| Sbjct 2678 TTAATCTTTGTTGGTCAGGAGGGATTCCTTCCTTATCTTGAATTTTGGCTTTTA-CATTT 2736 Query 33680 TCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 ||| || || | || || |||| || || |||||||| ||||||||||| ||| Sbjct 2737 TCAATAGTATCTGAAGCCTCAACTTCAAGAGTAATGGTTTTACCAGTTAACGTTTTAACA 2796 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 2797 AAGATCTGCAT 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322039661579520