Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1488354 98.7 7e-16 seq663341 86.0 4e-12 seq678478 82.4 5e-11 >seq1488354 Length=939 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||||||||| ||||| ||| |||||| | || || ||| | Sbjct 367 AATGCAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTC 308 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || |||||| |||||| || ||||| ||| |||| || || Sbjct 307 TGACACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 248 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || | || ||||| |||||||||||||| || | | | | ||| || ||||| Sbjct 247 ACAAAGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAA 188 Query 27969 CATCCAAAAAGA 27980 || |||||||| Sbjct 187 TATTCAAAAAGA 176 >seq663341 Length=403 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||| ||||||||||||||||| |||||| |||||| | || || | ||||| | Sbjct 179 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTG-AAGCATC 237 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| |||||| || ||||| ||| |||| || || Sbjct 238 TGACACTATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGACCA 297 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTT-GTCCGATTAC 27966 ||| | ||||||||||| ||||| ||| | || || | || | ||| || || || Sbjct 298 GCAGAGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGTACTCTTAGT--GACTAT 355 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTG 28008 || ||||| ||||| ||| | ||||| ||| || | ||| Sbjct 356 AATATCCAGAAAGAATCCACACTCCATTTAGTTCTGAGGTTG 397 >seq678478 Length=406 Score = 82.4 bits (90), Expect = 5e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA-C 27848 |||||||| ||||||||||||||||| |||||| |||||| | || || | ||||| | Sbjct 227 ATGCAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTG-AAGCATC 285 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| |||||| || ||||| ||| |||| || || Sbjct 286 TGACACTATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGACCA 345 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA 27952 ||| | ||||||||||| ||||| ||| | || || | |||| Sbjct 346 GCAGAGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCA 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348647436188412