Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq678478 167 2e-36 seq1488354 127 1e-24 seq252373 116 2e-21 seq770237 113 3e-20 seq663341 113 3e-20 seq1656961 100 2e-16 seq242576 98.7 7e-16 seq1135619 84.2 1e-11 >seq678478 Length=406 Score = 167 bits (184), Expect = 2e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| |||||||| |||||||| || |||||||| ||||| ||||||||||| | | || Sbjct 1 GCAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGA 60 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| |||| | ||||| ||||| ||||||||||| | || || |||||||| Sbjct 61 CACAATTGAGAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAACA 120 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | || || ||||| || || ||||| ||||| | || || || | || |||||||| Sbjct 121 GAGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAACAT 180 Query 23793 ACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||||||||||| | ||||||||| | ||||| ||||||| Sbjct 181 CCAAAAAGAGTCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGG 225 >seq1488354 Length=939 Score = 127 bits (140), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || ||| | ||||||||||| ||||| | ||||| || | | Sbjct 595 AATGCAAATTTTTGTGAAGACCTTAACGGGAAAAACTATCACCTTGGAAGTAGAGCCTTC 536 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | ||| ||||||| || ||||| ||| | || ||||| || Sbjct 535 AGACACAATTGAAAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCA 476 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATT 23785 |||| | ||||| ||||| || |||||||| ||||| | ||||| |||| |||| Sbjct 475 ACAGAGATTAATTTTTGCTGGAAAACAACTAGAAGATGGCAGAACGC---TTAGT-GATT 420 Query 23786 ACAACATACAAAAAGAGTCCACATTACAT 23814 | || || ||||| || |||||||||||| Sbjct 419 ATAATATTCAAAAGGAATCCACATTACAT 391 >seq252373 Length=335 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | || || || || || ||||| || ||||| | | Sbjct 255 ATGCAAATTTTCGTTAAGACTTTGACTGGGAAGACTATAACTCTAGAGGTTGAGGCAAGT 196 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| |||||| || |||||||| | || || || ||| Sbjct 195 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAA 136 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| |||||||| ||||||| | || || | ||||||||| Sbjct 135 CAGCGATTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGAACACTGTCCGATTACAAT 76 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||||| || ||||||||||| Sbjct 75 ATTCAGAAAGAGTGTACTTTACATTTAGT 47 >seq770237 Length=425 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || ||||| | || || || || || || || |||||||| | Sbjct 51 AAAATGCAGATCTTTGTGAAAACTTTGACTGGGAAGACCATAACACTAGAAGTTGAGCCT 110 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||||| | || ||| ||| || ||||||||| | || ||||| Sbjct 111 TCAGATACAATTGAAAATGTCAAGGCAAAGATTCAAGATAAAGAAGGTATCCCACCAGAC 170 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || ||||| || ||||| || || || | || ||| | | || ||| Sbjct 171 CAGCAAAGGTTGATTTTTGCAGGAAAACAGCTTGAGGATGGGCGTACTCTCAGTGACTAC 230 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || |||||||| ||||| | |||||||| || |||||| |||| || Sbjct 231 AATATCCAAAAAGAATCCACTCTGCATTTAGTGTTGAGGTTGAGAGGGGG 280 >seq663341 Length=403 Score = 113 bits (124), Expect = 3e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| ||||| ||||| ||||||||||| | || || ||||| Sbjct 11 GACACTATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAG 70 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| ||||| || || ||||| ||||| | || || || | || |||||| Sbjct 71 CAGAGATTAATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAAC 130 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| |||||| | ||||||||| | ||||| ||||||| Sbjct 131 ATCCAAAAAGAATCCACACTCCATTTAGTTCTGCGGTTGAGAGGAGG 177 >seq1656961 Length=2936 Score = 100 bits (110), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 8/194 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||| | || || ||||| || ||||| |||||||| | | Sbjct 2807 ATGCAGATCTTTGTTAAAACGTTAACTGGTAAAACCATTACTCTTGAAGTTGAGGCTTCA 2748 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| ||||| |||||| || || ||||| | || || || ||| Sbjct 2747 GATACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCTGACCAA 2688 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATTA 23786 || | ||||| || || || |||||||| ||||| ||||| | || | ||||| Sbjct 2687 CAAAGATTAATCTTCGCAGGAAAACAACTTGAAGATGGGCGAACCCTCTCT----GATTA 2632 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 2631 CAACATCCAGAAAG 2618 >seq242576 Length=334 Score = 98.7 bits (108), Expect = 7e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 ||||||| || ||||||||| | || ||||||||||| | | |||||||| || || Sbjct 328 AAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGGTAA 269 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 |||||| ||||| | | || || ||||||| || ||||||||||| ||||| | || Sbjct 268 ACAACTTGAAGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCTTCA 209 Query 23814 TTTAGTTTTAAGGTTGCGAGGAGG 23837 | | ||| | ||||| | ||||| Sbjct 208 TCTTGTTCTTCGGTTGAGGGGAGG 185 >seq1135619 Length=547 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||||||||| | || || ||||| ||| | || || ||||| || || ||||| ||| Sbjct 8 GACAAAGAAGGCATTCCACCCGATCAGCAGAGATTGATTTTTGCTGGAAAGCAACTTGAA 67 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | ||||| | ||||||||||||| ||||| || || || | || || || | Sbjct 68 GATGGTCGCACACTTAGCGATTACAACATCCAAAAGGAATCTACGCTCCACTTGGTACTT 127 Query 23824 AGGTTGCGAGGAGG 23837 || ||| ||||||| Sbjct 128 AGATTGAGAGGAGG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331156594366448