Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1644865 313 3e-80 seq509544 91.5 2e-13 >seq1644865 Length=2180 Score = 313 bits (346), Expect = 3e-80 Identities = 523/755 (69%), Gaps = 6/755 (1%) Strand=Plus/Minus Query 47826 TCTTCTTGAGA---CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAA 47882 ||||||| || |||||| || ||||||||||||||| || | ||||| || ||| Sbjct 808 TCTTCTTCGGAACTCATAACACCACATTTTTGATATTCACCTACTCTCTTCTCAAAGAAA 749 Query 47883 TTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAA 47942 |||||||| ||||| | || ||||| ||||| || || || ||||| | | ||||| Sbjct 748 TTAGTTTTCCCTTCGAGGGAAATATTCTCCATGAAGTCTAAAGGATTTTCAACTTTATAG 689 Query 47943 AtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTC 48002 |||| | |||| || ||| | |||||||| || || ||||| || || |||| Sbjct 688 TGCTTTTCACATCCCAACTCTATTAAAAGTCTATCGGCGACAAATTCAATGTACTGTTTC 629 Query 48003 ATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGT 48062 || | | |||||||||||| || || ||| || | || || || | || |||||| Sbjct 628 ATTAATGTACAATTCATTCCAATTAGAGCAACGGGCAATGCATCTGTTAAGAATTCTTGT 569 Query 48063 TCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAAC 48122 || || | || || || ||||| || || ||||||| ||| ||| || | | Sbjct 568 TCAATTGAAACGGCGTCTGTAATTATTTCCGTGACAGTTTCCTTACTAGGTTTATTAACC 509 Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 | ||| ||||||||||| || || ||||| ||||||||||||||| ||| || | | Sbjct 508 AGATGCTTAAACATTAAGCACGCGAAATCGGTATGAAGACCTTCATCCCTAGATATAAGT 449 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 |||||| ||| || || || ||||| ||||| | || ||||||||||| || || || Sbjct 448 TCGTTACTAAAAGTAAGTCCTGGCATCAGTCCTCTCTTCTTGAGCCAAAAAATAGCAGCA 389 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||||||| || ||||| ||||| || | ||||| || || ||| || ||||| Sbjct 388 AAAGATCCACTGAAAAATATCCCTTCAACAGAGGCAAACGCAACAACTCTTTCGGCGTAA 329 Query 48303 CTGG---CTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | |||| ||| ||||| | | ||||| || || ||||| || ||||| || Sbjct 328 GAAGCTTCTTCATTGCCAATCCAACATAAAGCCCAGTCGGCTTTCTTTTTGACACATGGG 269 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 | ||||| || || |||||||| ||||||| || ||| | || ||||| Sbjct 268 AGAGTTTCGATGGCGTTAAAGAGTTTCGTTTTTTCTTTAGGATCAGATATATAGGTATCG 209 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | | |||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 208 ATCAGTAAACTATACATTTCACTGTGAACGTTTTCGATCATAATCTGGAAACCGTAAAAG 149 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 | || ||||| | | || | ||| || || | || |||| ||||| || || Sbjct 148 AACCTTGCTTCAGGAACTTGAATCTCTTGGCAGAACCTCTCCACCAAGTTCTCGTTGACA 89 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATG 48574 |||||||| |||||||| ||||| | ||||| Sbjct 88 ATTCCATCCGATGCAGCAAAGAATGCCAGAACATG 54 >seq509544 Length=375 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||||||||||| || || || || | | || |||||||| |||| Sbjct 273 TCCAGCCATAGAAATGCATGGAGGTGAGCTTCCTATGATTTGGCGACGCTATATGTATAT 214 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||||||| ||||| |||||||||||||| || || ||||| | | || || Sbjct 213 TGAGCGACTGACTCTGATCTATGAAAGCTCCTCTGTCGGCAGCCATCTCCAAAACTACCT 154 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG-AAAACTTGTT 77004 |||| ||||| ||||| | || ||| | ||||| || Sbjct 153 TTTGGGGAATCTCCCACACTGTCTTGTATAACTTCTT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680223544371840