Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ligia_20exotica_20[genbank_20GCA_5F002091915.1_202017-03-31] 1,663,556 sequences; 953,555,114 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1488354 145 2e-29 seq663341 143 6e-29 seq678478 140 8e-28 seq770237 131 4e-25 seq1656961 113 1e-19 seq1135619 111 4e-19 seq242576 104 6e-17 seq252373 98.7 2e-15 >seq1488354 Length=939 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || || ||||| || || | || || ||| || ||| Sbjct 363 CAAATTTTTGTGAAAACTCTAACTGGTAAAACTATTACTTTGGAAGTAGAACCTTCTGAC 304 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || |||||| ||| |||||||| ||||| || || || || ||||| ||| Sbjct 303 ACCATAGAAAATGTCAAAGCAAAAATTCAGGATAAAGAGGGTATTCCACCAGACCAACAA 244 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | ||||| || || |||||||| | ||||||||||| || | || || || | Sbjct 243 AGGCTTATATTTGCTGGAAAACAATTGGAAGATGGAAGAACATTGAGTGACTACAATATT 184 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||||||||||| || || ||| | || ||||| ||||| Sbjct 183 CAAAAAGAATCTACCCTTCATTTAGTGTTGAGGCTCAG 146 >seq663341 Length=403 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || ||||| || ||||| ||||| ||| || ||| Sbjct 182 CAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTGAAGCATCTGAC 241 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||| || || || ||||| || || || || |||||||| Sbjct 242 ACTATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGACCAGCAG 301 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || || |||||||| | |||||| || ||||| || Sbjct 302 AGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGTACTCTTAGTGACTATAATATC 361 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || |||||||| ||||| ||| | ||| |||| Sbjct 362 CAGAAAGAATCCACACTCCATTTAGTTCTGAG 393 Score = 93.3 bits (102), Expect = 1e-13 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 177974 AAGCT-CAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 ||||| ||||||| ||||| || || ||| || || || ||||||||||| || || | Sbjct 3 AAGCTTCAGACACTATCGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCAC 62 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| || | || || || ||||| || || |||||||| | || | | Sbjct 63 CCGATCAGCAGAGATTAATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTG 122 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | || ||| ||||||||||||| ||||| ||| | ||| || Sbjct 123 ACTACAACATCCAAAAAGAATCCACACTCCATTTAGTTCTG 163 >seq678478 Length=406 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || ||||||||||| ||||||||||| || ||| |||||| Sbjct 2 CAAATTTTCGTCAAAACCCTTACAGGAAAAACAATCACCCTCGAAGTTGAAGCTTCAGAC 61 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || || ||||||||||| || || || || || || Sbjct 62 ACAATTGAGAATGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAACAG 121 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || || |||||||| | || | || || ||| || Sbjct 122 AGATTGATTTTTGCTGGAAAGCAACTAGAAGATGGTCGTACATTGAGTGACTACAACATC 181 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| || ||||| ||| | ||| || Sbjct 182 CAAAAAGAGTCCACACTCCATTTAGTTCTG 211 Score = 114 bits (126), Expect = 3e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || ||||| || ||||| ||||| ||| || ||| Sbjct 230 CAAATCTTTGTGAAAACTCTTACGGGGAAAACTATTACCCTAGAGGTTGAAGCATCTGAC 289 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||| || || || ||||| || || || || |||||||| Sbjct 290 ACTATCGAAAATGTAAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGACCAGCAG 349 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 || | || || || ||||| || || |||||||| | |||||| || ||||| Sbjct 350 AGATTAATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACTCTTAGTGACTATAA 405 >seq770237 Length=425 Score = 131 bits (144), Expect = 4e-25 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||||||| | || || || || || || || || || || Sbjct 51 AAAATGC---AGATCTTTGTGAAAACTTTGACTGGGAAGACCATAACACTAGAAGTTGAG 107 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || || || || ||||| ||||||||| || |||||||| ||||| || Sbjct 108 CCTTCAGATACAATTGAAAATGTCAAGGCAAAGATTCAAGATAAAGAAGGTATCCCACCA 167 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||| | | || || || ||||||||||| || ||||| | ||||| || Sbjct 168 GACCAGCAAAGGTTGATTTTTGCAGGAAAACAGCTTGAGGATGGGCGTACTCTCAGTGAC 227 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || ||||||||||||| || |||||| | || ||||| Sbjct 228 TACAATATCCAAAAAGAATCCACTCTGCATTTAGTGTTGAG 268 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||| | || || || || |||||||| || || ||| |||||| Sbjct 285 CAAATCTTTGTGAAAACTTTGACTGGTAAGACCATCACCCTTGAAGTTGAAGCATCAGAC 344 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || || || ||||||||||| || || || || ||||| Sbjct 345 ACGATTGAGAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCCGATCAGCAG 404 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || ||||| Sbjct 405 AGATTAATTTTTGCTGGAAA 424 >seq1656961 Length=2936 Score = 113 bits (124), Expect = 1e-19 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| | || || ||||| || || || || || || ||||| Sbjct 2804 CAGATCTTTGTTAAAACGTTAACTGGTAAAACCATTACTCTTGAAGTTGAGGCTTCAGAT 2745 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 2744 ACTATTGAAAATGTAAAAGCCAAAATTCAAGATAAGGAAGGAATCCCTCCTGACCAACAA 2685 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||| || |||||||| | || || | ||||| ||| || Sbjct 2684 AGATTAATCTTCGCAGGAAAACAACTTGAAGATGGGCGAACCCTCTCTGATTACAACATC 2625 Query 178104 CAAAAAG 178110 || |||| Sbjct 2624 CAGAAAG 2618 >seq1135619 Length=547 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || ||||| || ||||| || || || ||| ||||| Sbjct 146 CAAATATTTGTCAAAACCTTAACTGGAAAGACCATCACTCTTGAAGTTGAACCTTCAGAT 205 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || || |||||||||||||| || |||||||| Sbjct 206 ACAATTGAAAATGTTAAGGCTAAAATCCAAGATAAAGAAGGAATCCCACCAGACCAGCAG 265 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || || |||||||| | || || || || ||| || Sbjct 266 AGATTGATTTTTGCTGGAAAGCAACTTGAAGATGGTCGCACACTGAGTGACTACAACATC 325 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || ||| | || ||||| || ||| Sbjct 326 CAAAAGGAGTCCACTCTTCATTTAGTATTGAGGCTGAGA 364 >seq242576 Length=334 Score = 104 bits (114), Expect = 6e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||| |||||||| |||||||| ||||| || || || ||| | ||||| || || || || Sbjct 328 AAAAATTCAGGATAAAGAAGGTATCCCACCAGATCAACAAAGGCTTATATTTGCTGGTAA 269 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 ||| || |||||||| || || | ||||||||| | ||||||||||| || || || Sbjct 268 ACAACTTGAAGATGGTAGAACATTGAGCGATTATAATATACAAAAAGAATCCACGCTTCA 209 Query 178124 TCTTGTT 178130 ||||||| Sbjct 208 TCTTGTT 202 >seq252373 Length=335 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||||||||| || ||| | || || || || || || || ||||| || ||| Sbjct 252 CAAATTTTCGTTAAGACTTTGACTGGGAAGACTATAACTCTAGAGGTTGAGGCAAGT--- 196 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || ||||| || || || || || ||||| || ||||||||||| || || ||||| Sbjct 195 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAAGAAGGAATTCCCCCTGACCAA 136 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | ||||| || || |||||| | |||||||| | || || ||||||| || Sbjct 135 CAGCGATTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGAACACTGTCCGATTACAAT 76 Query 178101 GTCCAAAAAGA 178111 | || ||||| Sbjct 75 ATTCAGAAAGA 65 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178074498541864