Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6691 98.7 1e-15 >seq6691 Length=42033 Score = 98.7 bits (108), Expect = 1e-15 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 16799 TCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACC 16858 || || |||||||| ||||| || |||| | ||||||||||| || | || | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 16859 GGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGC 16917 || || || || || | ||| ||| || || | || || ||||| | ||| |||| Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAG- 14163 Query 16918 AACTCGTTCCTCGGACGGTGTATGT-TTAAGATGTTTAAACATCAGACATGCGAAATCGC 16976 |||||| | | ||| | ||| |||| ||||| ||||| || || || || |||| Sbjct 14164 GACTCGTGCGGGGCTGGGTTTCTGTACTAAG-TGTTTGAACATGAGGCAGGCAAAGTCGC 14222 Query 16977 AATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTC 17036 | || | |||||||||| | ||| | ||||| || ||||| |||||||| | Sbjct 14223 AGTGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGC 14282 Query 17037 CTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGG 17096 | || ||||| | |||||| || | ||| || || || ||||| || || || ||| Sbjct 14283 CACGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGC 14342 Query 17097 ATGCAAACGC 17106 | || || || Sbjct 14343 AAGCGAAGGC 14352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517100290827120