Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_001416.1
Length=48502
Score E
Sequences producing significant alignments: (Bits) Value
seq9360 226 9e-55
>seq9360
Length=49093
Score = 226 bits (250), Expect = 9e-55
Identities = 522/780 (67%), Gaps = 22/780 (3%)
Strand=Plus/Minus
Query 8621 TTTGATGGTCGCCCCGCTGTTTTTGATGAGGCGGATTTTCCGGCAGTTGCCGTTTATCTC 8680
|| || || || |||| || |||| ||| ||||| ||||| ||||| || |||||
Sbjct 39507 TTCGACGGGCGGCCCGTATTTCTTGAAGAGCAAGATTTGCCGGCCGTTGCAGTGTATCTG 39448
Query 8681 ACCGGCGCTGAATACACGGGCGAAGAGCTGGACAGCGATACCTGGCAGGCGGAGCTGCAT 8740
| | || || ||||| ||||| |||||| || | ||||||||| | | ||||
Sbjct 39447 TCGGATGCCGAGTACACCGGCGACACGCTGGATGAAGACAGCTGGCAGGCCGTGTTGCAC 39388
Query 8741 ATCGAAGTTTTCCTGCCTGCTCAGGTGCCGGATTCAGAGC--TGGATGCGTGGATGGAGT 8798
| |||||||| ||| || || || ||| || | ||||| |||||||||
Sbjct 39387 GTTGAAGTTTTTCTGAAAGCAGTAAACCCAGA--CAGCGCACTTGATGCCTGGATGGAGG 39330
Query 8799 CCCGGATTTATCCGGTGATGAGCGA-TATCCCGGCACTGTCAGATTTGATC---ACCAGT 8854
| ||||| |||| ||| ||| || || || | || || ||| |||| |
Sbjct 39329 AAAAAGTCTATCCCTCGATG-GCGTCTATACCTGCCTTGGCTGACTTAATCGAAACCATT 39271
Query 8855 ATGGTGGCCAGCGGCTATGACTACCGGCGCGACGATGATGCGGGCTTGTGGAGTTCAGCC 8914
| | ||| ||||||||||| | ||| || ||||| || | |||| |||| |
Sbjct 39270 ACACCG--CAG-GGCTATGACTATCAGCGTGATGATGAAATGGCCACGTGGGGTTCGGTA 39214
Query 8915 GATCTGACTTATGTCATTACCTATGAAATGTGAGGA--CGCTATGCCTGTACCAAATCCT 8972
|||||| | ||| | | || ||| ||||| |||| ||||||| ||||||||
Sbjct 39213 GATCTGTCCTATTCCCTCACTTATTCAATGTAAGGATTTTTTATGCCTACTCCAAATCCA 39154
Query 8973 ACAATGCCGGTGAAAGGTGCCGGGACCACCCTGTGGGTTTATAAGGGGAGCGGTGACCCT 9032
|||||| |||||||| ||||| || || ||| | || | || ||| | ||
Sbjct 39153 CTGGCGCCGGTTAAAGGTGCAGGGACAACGCTCTGGTTGTACACCGGTTCGGGTAATGCT 39094
Query 9033 TACGCGAATCCGCTTTCAGACGTTGACTGGTCGCGTCTGGCAAAAGTTAAAGACCTGACG 9092
| || || ||||| ||||| |||||||| || || || ||| | || ||||| ||
Sbjct 39093 TTTGCTAACCCGCTCTCAGATATTGACTGGAACCGCCTTGCTAAAATCAAGGACCTCACT 39034
Query 9093 CCCGGCGAACTGACCGCTGAGTCCTATGACGACAGCTATCTCGATGATGAAGATGCAGAC 9152
|| || || |||| || |||||||| || || | ||||| || |||||||| || |||
Sbjct 39033 CCGGGTGAGATGACTGCGGAGTCCTACGATGATACTTATCTGGACGATGAAGACGCGGAC 38974
Query 9153 TGGACTGCGACCGGGCAGGGGCAGAAATCTGCCGGAGATACCAGCTTCACGCTGGCGTGG 9212
|||| ||| |||| |||||| |||||||| || |||||| || || || || |||
Sbjct 38973 TGGAATGCTACCGCTCAGGGGGCAAAATCTGCAGGTGATACCTCGTTTACACTCGCATGG 38914
Query 9213 ATGCCCGGAGAGCAGGGGCANNNNNNNNNNNNNNCGTGGTTTAATGAAGGCGATACCCGT 9272
| |||||| || |||| || | ||||||| ||| ||| | ||
Sbjct 38913 AAGCCCGGTGAAGAGGGACAGAAAGACCTGGTCGCATGGTTTATTGATGGC----TCAGT 38858
Query 9273 GC-CTAT---AAAATCCGCTTCCCGAACGGCACGGTCGATGTGTTCCGTGGCTGGGTCAG 9328
| |||| |||||| | ||| |||||||| || || || || || |||||| |||
Sbjct 38857 TCGCTATTACAAAATCAAATACCCAAACGGCACTGTTGACGTTTTTCGCGGCTGGTGCAG 38798
Query 9329 CAGTATCGGTAAGGCGGTGACGGCGAAGGAAGTGATCACCCGCACGGTGAAAGTCACCAA 9388
|| | ||||| ||| | | || || ||||| |||||||| || | |||| | |||||
Sbjct 38797 TAGCCTGGGTAAAGCGATCCCTGCAAAAGAAGTCATCACCCGTACAGCGAAAATTACCAA 38738
Score = 165 bits (182), Expect = 3e-36
Identities = 213/294 (72%), Gaps = 0/294 (0%)
Strand=Plus/Minus
Query 11955 CATGCTGCCCTGCTGACGCTTCAGGCAGAACTCCGGACGCTGGAGAAGCATGCCGGAGCA 12014
|| |||| ||||| |||||||||||| | || |||||| ||| ||||| || | | |
Sbjct 35686 CAGGCTGAACTGCTTACGCTTCAGGCACAGCTAAAGACGCTTGAGCAGCATACCAGCGTA 35627
Query 12015 AATGAGAAAATCAGCCAGCAGCGCCGGGATTTGTGGAAGGCGGAGAGTCAGTTCGCGGTA 12074
|| || ||||| |||| || | |||| ||||| |||| || | ||| ||| | |||
Sbjct 35626 AACGATGTTATCAGTAAGCAACGGCAGGATCTGTGGCAGGCTGAAAATCAATTCACCGTA 35567
Query 12075 CTGGAGGAGGCGGCGCAACGTCGCCAGCTGTCTGCACAGGAGAAATCCCTGCTGGCGCAT 12134
||| ||||||| || || |||||||| | || ||||| ||||| |||||||||||
Sbjct 35566 CTGCAGGAGGCTGCTGGGCGACGCCAGCTCACGGCTCAGGAAAAATCACTGCTGGCGCAC 35507
Query 12135 AAAGATGAGACGCTGGAGTACAAACGCCAGCTGGCTGCACTTGGCGACAAGGTTACGTAT 12194
|| ||||| ||||| ||||||||||| || ||||| | || || || ||||| | |
Sbjct 35506 AAGGATGAAACGCTCGAGTACAAACGGCAACTGGCCGATCTGGGTGATAAGGTCGCCAGT 35447
Query 12195 CAGGAGCGCCTGAACGCGCTGGCGCAGCAGGCGGATAAATTCGCACAGCAGCAA 12248
||| | |||||| || ||| | ||||| | || || | |||||| |||
Sbjct 35446 CAGCAAAAGCTGAACCAACTTGCGGATCAGGCCGCAAAGTTTGAACAGCAACAA 35393
Score = 134 bits (148), Expect = 4e-27
Identities = 169/232 (73%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 10092 GCAGAGCCTGTTTCTGCGGGAAAGTGTTCGACGGTGAGCTGAGTTTTGCCCTGAAACTGG 10151
|||||||||||| |||||| |||| | | | | ||||| | ||| |||||| ||||
Sbjct 38026 GCAGAGCCTGTTACTGCGGAAAAGCCCTTGCCAGCGAGCTAAAGTTTATCCTGAATCTGG 37967
Query 10152 CGCGTGAGATGGGGCGACCCGACTGGCGTGCCATGCTTGCCGGGATGTCATCCACGGAGT 10211
|||| ||| | || || ||||||||||| |||||||| || || ||| | ||||| |||
Sbjct 37966 CGCGCGAGTTTGGACGGCCCGACTGGCGCGCCATGCTGGCTGGAATGACTTCCACTGAGC 37907
Query 10212 ATGCCGACTGGCACCGCTTTTACAGTACCCATTATTTTCATGATGTTCTGCTGGATATGC 10271
| ||||||||||| || || | ||||||||||| || | || ||| ||| ||
Sbjct 37906 TGGGCGACTGGCACCAGTTCTATCGGGAGCATTATTTTCAGGACGCTCAGCTCGATGCGC 37847
Query 10272 ACTTTTCCGGGCTGACGTACACCGTGCTCAGCCTGTTTTTCAGCGATCCGGA 10323
| || ||||||||| || || | || || || ||| ||||||||||
Sbjct 37846 ATTTCTCCGGGCTGCTTTATTCCATCTCCACACTCTTCTTCCGCGATCCGGA 37795
Score = 116 bits (128), Expect = 1e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 12764 CGGCGGCAAATATGAGCCAGCGGGGATTGTTCACCGTGGTGAGTTTGTCTTCACGAAGGA 12823
||||||||| |||||||| || || ||||||||||||| || ||||| ||||| || ||
Sbjct 34883 CGGCGGCAAGTATGAGCCTGCCGGTGTTGTTCACCGTGGAGAATTTGTTTTCACAAAAGA 34824
Query 12824 GGCAACCAGCCGGATTGGCGTGGGGAATCTTTACCGGCTGATGCGCGGCTATGCCACCGG 12883
|||||||||| || || || ||||| || || ||||||||||| |||||||| ||
Sbjct 34823 ATCAACCAGCCGAATCGGTGTAACTAATCTCTATCGTCTGATGCGCGGTTATGCCACGGG 34764
Query 12884 CGGT 12887
||||
Sbjct 34763 CGGT 34760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 154958033102912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |