Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_001609.1
Length=11624
Score E
Sequences producing significant alignments: (Bits) Value
seq35 354 6e-94
seq223 174 1e-39
>seq35
Length=455554
Score = 354 bits (392), Expect = 6e-94
Identities = 517/721 (72%), Gaps = 10/721 (1%)
Strand=Plus/Plus
Query 4820 GCCTCCATGTAGGCCAGATAGGCGTGATAGAGGTATTTACGGTAATTGCGCGGGATGATA 4879
|| ||||| | | ||| |||||||||||||| || || || || ||| || ||
Sbjct 31444 GCTTCCATAAACGACAGGTAGGCGTGATAGAGATACTTGCGTGGGTTAGCCGGAATAATG 31503
Query 4880 CTGGCGTTCCCCATATACATGCCGCT-GGTCTGCGG-CAGGGTTTCCAGATAGCCGATAA 4937
||||||| || ||||| | |||| | ||| ||| | ||| | ||| || ||| |
Sbjct 31504 TTGGCGTTGCCAATATAAAGGCCGTTTGGTGTGCTGACAGCGAG--CAGGTAACCGCAGA 31561
Query 4938 AATCAAACGTCGGGTCGGCATCCCGTTTGATGTTCAGTGCCTCGTCTGAGTTCTGCTGGG 4997
|||||| | || |||||| ||||| || | || ||| || || || |||||||| |
Sbjct 31562 AATCAACCAAGGGATCGGCACTACGTTTTATCTCCAATGCTTCATCGGAATTCTGCTGTG 31621
Query 4998 ACTGAAGCAGTGACCGGGCGAGCATCGGGTC--GCTGAACTTCTGCATCAGGTGACGCAC 5055
||| | |||| || || | || ||| || ||| | ||||||||||| || ||
Sbjct 31622 CCTGTAACAGTTCGCGCGC-ATCACTGGGAACGGCAAAACGT-TGCATCAGGTGGCGGAC 31679
Query 5056 GATGACCGCCAGCTCGCGGGTGATTTTGTCCTTAAGCTGCGGGTCGCGCTCCTGCGGGGC 5115
||||| || ||||| | ||||| || | |||||||| || || || | | |
Sbjct 31680 AATGACGGCTAGCTCCTGACCAATTTTCTCTATTAGCTGCGGATCCCGTTCATTGGCCGG 31739
Query 5116 TATCTGTTCCGGG-AAGTGAATAATCACCCGTCGGCGTGACACGCCGCCGCTGCGGTCGG 5174
|||| || ||| ||||| || ||||| || | || || ||||||||||| || ||
Sbjct 31740 TATCACCTCAGGGAAAGTG-ATGATCACGCGCCTACGCGATACGCCGCCGCTACGATCAC 31798
Query 5175 TGAAGCGCATCGGGTTATTGTTCACGGCCAGAATCACCGCCGGGATGTGCGTGGAGTACG 5234
| || |||||||||| |||||||| |||||||| |||||||| || || || || || |
Sbjct 31799 TAAACTGCATCGGGTTGTTGTTCACTGCCAGAATAACCGCCGGAATATGTGTTGAATAAG 31858
Query 5235 CATCCCGGTATTTCGGGTCAACGGACACCGCATCGCCGCCGGTGATGGCCTTGAGTCCGG 5294
|||| || ||||||||||||| | |||||||||||||| |||||||| || | ||| |
Sbjct 31859 CATCACGATATTTCGGGTCAATCGCTACCGCATCGCCGCCAGTGATGGCTTTAATTCCTG 31918
Query 5295 CACCGTCGCCGCTCCATTTTTCCTGGTCCGGCAGGCGTATCAGTGAGAAGCCAGTTAACG 5354
| ||||||||||||||||| || ||||| |||| ||||||||| | || | |
Sbjct 31919 CGCCGTCGCCGCTCCATTTCTCTTGGTCGGGCAACACAATCAGTGAGTATCCCACCACAG 31978
Query 5355 CGGCACGTTCACGCGGGGATTCCAGCGTCTCGATGGTGGCCGACGTGGCGTTATCCTCCC 5414
||||| ||||| | ||||||| ||||| ||| | || || || | ||| || || |
Sbjct 31979 AAGCACGCTCACGTGCTGATTCCAAAGTCTCAATGCTTGCGGAAGTAGTGTTGTCTTCTC 32038
Query 5415 CGGCCAGCAGGGTGGCTATTTCGGCCATGATACTTTTGCCGCTGCCGCCGGGACCGGTCA 5474
| || |||| | ||||| | ||||||| ||||| ||||||||||| || || ||||
Sbjct 32039 CCGCAAGCATGCGCGCTATGGCTGCCATGACGCTTTTACCGCTGCCGCCTGGTCCTGTCA 32098
Query 5475 CCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTTGCCAGCACCATAAACAGTGCAGCCAGAA 5534
| || || || | |||||||| || ||||| ||||| ||||| || || || || ||||
Sbjct 32099 CTTCAAGGAACAATTGCCAGTCATACCGGTTCGCCAGAACCATGAAAAGCGCCGCGAGAA 32158
Query 5535 T 5535
|
Sbjct 32159 T 32159
Score = 251 bits (278), Expect = 5e-63
Identities = 360/512 (70%), Gaps = 45/512 (9%)
Strand=Plus/Plus
Query 8193 GGCAGACGGGCAGCAAGGGAGAGCACATAGTCACGGACAAGGGAACGGCGGGCACTGCGT 8252
||||| || | |||| | | ||||||||||||||| ||| || |||||| ||
Sbjct 34228 GGCAGGCGACCGGCAAAGCACAGCACATAGTCACGGGCAAACAGGCGACGGGCAGAATGT 34287
Query 8253 TCATCACCGGCGACGGTGCGAAGCATACAGATACGGGGATGACGGTCTGCGCGACGGACA 8312
|||| ||||| ||| ||| |||||||| | | | | | | || || || || ||
Sbjct 34288 TCATTGTCGGCGGCGGAGCGCAGCATACAAACCGGCGCTTTAGGTTCAGCACGGCGCACG 34347
Query 8313 GCCGCAAACACAAAGACAAATTCAGGGTGTGAGGGGGTAAGGGTTGTAGCCATGATGGCA 8372
|| || |||| || ||||| |||||||| || ||| ||||||||||||||| |||||
Sbjct 34348 GCGGCGAACAGGAACGTAAATTTAGGGTGTGGGGTGGTGAGGGTTGTAGCCATGGTGGCA 34407
Query 8373 GCCTCCTGTGAATAGCAAATAACGCTATCGCCGGAGTTCTCACGCTCGATGGCGATAGCC 8432
|||||| ||| || || |||| | | |||||||||||||| || | |||||
Sbjct 34408 GCCTCCATTGAGTAATGGTTATTGCTACCACTTGAGTTCTCACGCTCTTGGGTGGTAGCC 34467
Query 8433 CAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGCCAGCCCGGAGGCTGCCCCGCC 8492
||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||
Sbjct 34468 CAGACGGGGGTGAGAATACCGGCCTCAATGAATACCGGCCAGCCCGAAGGCTGCCCCGCC 34527
Query 8493 TGAGCTACCATTGACTCTGCGGCATAATGAGCGGACGCGGGCAGGATGCACGGAATGCCA 8552
||||| |||||| || | || ||| | |||| | ||
Sbjct 34528 TGAGCCACCATT---------GCTTGATAAGCACA-GCGGTTAAGA-------------- 34563
Query 8553 TCTGCACGACTGACCACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACA 8612
|| ||||| || |||| | || || || ||| | |||||
Sbjct 34564 ----AACCACTGAGCA----------GATAA-CAGGTGCGCTAAGGC------TACGACA 34602
Query 8613 CaaaaaaaGACGCGTGGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCG 8672
||||||| |||| ||||||| | ||||||| ||| |||||||||||||||||||||
Sbjct 34603 TAAAAAAACACGCCAGGCGCGTGTTGTGTCGCCATTGAGTTGCTCGGGTTCTCACGCCCG 34662
Query 8673 GCTGCCGATTTTGCGGCAGGCGAAAAACTATA 8704
||||||||||||||||||| ||||||||||
Sbjct 34663 GCTGCCGATTTTGCGGCAGCACAAAAACTATA 34694
>seq223
Length=511576
Score = 174 bits (192), Expect = 1e-39
Identities = 230/318 (72%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 2701 CGGTTCATATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGC 2760
|| |||| ||||| |||||| ||||||||||||| ||||| | ||||| ||| ||||
Sbjct 274394 CGATTCACATCCAGATAATCCGCCCACCACTGCAGCATTAGCCTGCGCTCCCCCAGATGC 274453
Query 2761 TCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTC 2820
|||| |||| |||||||||||||| ||| ||||| || ||| |||| |||| |
Sbjct 274454 TCGGCCTTATGAATATATGCCGCACGCACAGAGTTACGTTCCTGGTGACTCATCTGCCGC 274513
Query 2821 TCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTA 2880
|||| ||| || | ||| || |||||||| || | || || |||||||||||
Sbjct 274514 TCTACCGCATCCTTCGACCACAATCCCGACTCAATTAATGAACTACATGCCATAGTCCTG 274573
Query 2881 AACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTT 2940
|| |||||||| || ||||| | || ||||| |||||||| | | || || | ||
Sbjct 274574 AAACCATGCCCGCAAACCTCAATCTTCGTATCGTAGCCCATTACCCTCAGCGCCTTATTC 274633
Query 2941 ACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTA 3000
||||| || |||||||| |||| || ||||||||| || || | |||||| |
Sbjct 274634 ACCGTATTCTCACTCATCGGCTTACGTGGGTCATGATCGCCAACGAAGATCAGCTCACGA 274693
Query 3001 TCACCACTAATCTGCTTT 3018
| ||||| | ||||||
Sbjct 274694 TTTCCACTCA--TGCTTT 274709
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 37052884657888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |