Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq35 354 6e-94 seq223 174 1e-39 >seq35 Length=455554 Score = 354 bits (392), Expect = 6e-94 Identities = 517/721 (72%), Gaps = 10/721 (1%) Strand=Plus/Plus Query 4820 GCCTCCATGTAGGCCAGATAGGCGTGATAGAGGTATTTACGGTAATTGCGCGGGATGATA 4879 || ||||| | | ||| |||||||||||||| || || || || ||| || || Sbjct 31444 GCTTCCATAAACGACAGGTAGGCGTGATAGAGATACTTGCGTGGGTTAGCCGGAATAATG 31503 Query 4880 CTGGCGTTCCCCATATACATGCCGCT-GGTCTGCGG-CAGGGTTTCCAGATAGCCGATAA 4937 ||||||| || ||||| | |||| | ||| ||| | ||| | ||| || ||| | Sbjct 31504 TTGGCGTTGCCAATATAAAGGCCGTTTGGTGTGCTGACAGCGAG--CAGGTAACCGCAGA 31561 Query 4938 AATCAAACGTCGGGTCGGCATCCCGTTTGATGTTCAGTGCCTCGTCTGAGTTCTGCTGGG 4997 |||||| | || |||||| ||||| || | || ||| || || || |||||||| | Sbjct 31562 AATCAACCAAGGGATCGGCACTACGTTTTATCTCCAATGCTTCATCGGAATTCTGCTGTG 31621 Query 4998 ACTGAAGCAGTGACCGGGCGAGCATCGGGTC--GCTGAACTTCTGCATCAGGTGACGCAC 5055 ||| | |||| || || | || ||| || ||| | ||||||||||| || || Sbjct 31622 CCTGTAACAGTTCGCGCGC-ATCACTGGGAACGGCAAAACGT-TGCATCAGGTGGCGGAC 31679 Query 5056 GATGACCGCCAGCTCGCGGGTGATTTTGTCCTTAAGCTGCGGGTCGCGCTCCTGCGGGGC 5115 ||||| || ||||| | ||||| || | |||||||| || || || | | | Sbjct 31680 AATGACGGCTAGCTCCTGACCAATTTTCTCTATTAGCTGCGGATCCCGTTCATTGGCCGG 31739 Query 5116 TATCTGTTCCGGG-AAGTGAATAATCACCCGTCGGCGTGACACGCCGCCGCTGCGGTCGG 5174 |||| || ||| ||||| || ||||| || | || || ||||||||||| || || Sbjct 31740 TATCACCTCAGGGAAAGTG-ATGATCACGCGCCTACGCGATACGCCGCCGCTACGATCAC 31798 Query 5175 TGAAGCGCATCGGGTTATTGTTCACGGCCAGAATCACCGCCGGGATGTGCGTGGAGTACG 5234 | || |||||||||| |||||||| |||||||| |||||||| || || || || || | Sbjct 31799 TAAACTGCATCGGGTTGTTGTTCACTGCCAGAATAACCGCCGGAATATGTGTTGAATAAG 31858 Query 5235 CATCCCGGTATTTCGGGTCAACGGACACCGCATCGCCGCCGGTGATGGCCTTGAGTCCGG 5294 |||| || ||||||||||||| | |||||||||||||| |||||||| || | ||| | Sbjct 31859 CATCACGATATTTCGGGTCAATCGCTACCGCATCGCCGCCAGTGATGGCTTTAATTCCTG 31918 Query 5295 CACCGTCGCCGCTCCATTTTTCCTGGTCCGGCAGGCGTATCAGTGAGAAGCCAGTTAACG 5354 | ||||||||||||||||| || ||||| |||| ||||||||| | || | | Sbjct 31919 CGCCGTCGCCGCTCCATTTCTCTTGGTCGGGCAACACAATCAGTGAGTATCCCACCACAG 31978 Query 5355 CGGCACGTTCACGCGGGGATTCCAGCGTCTCGATGGTGGCCGACGTGGCGTTATCCTCCC 5414 ||||| ||||| | ||||||| ||||| ||| | || || || | ||| || || | Sbjct 31979 AAGCACGCTCACGTGCTGATTCCAAAGTCTCAATGCTTGCGGAAGTAGTGTTGTCTTCTC 32038 Query 5415 CGGCCAGCAGGGTGGCTATTTCGGCCATGATACTTTTGCCGCTGCCGCCGGGACCGGTCA 5474 | || |||| | ||||| | ||||||| ||||| ||||||||||| || || |||| Sbjct 32039 CCGCAAGCATGCGCGCTATGGCTGCCATGACGCTTTTACCGCTGCCGCCTGGTCCTGTCA 32098 Query 5475 CCTCCAGAAAGAGCTGCCAGTCGTAGCGGTTTGCCAGCACCATAAACAGTGCAGCCAGAA 5534 | || || || | |||||||| || ||||| ||||| ||||| || || || || |||| Sbjct 32099 CTTCAAGGAACAATTGCCAGTCATACCGGTTCGCCAGAACCATGAAAAGCGCCGCGAGAA 32158 Query 5535 T 5535 | Sbjct 32159 T 32159 Score = 251 bits (278), Expect = 5e-63 Identities = 360/512 (70%), Gaps = 45/512 (9%) Strand=Plus/Plus Query 8193 GGCAGACGGGCAGCAAGGGAGAGCACATAGTCACGGACAAGGGAACGGCGGGCACTGCGT 8252 ||||| || | |||| | | ||||||||||||||| ||| || |||||| || Sbjct 34228 GGCAGGCGACCGGCAAAGCACAGCACATAGTCACGGGCAAACAGGCGACGGGCAGAATGT 34287 Query 8253 TCATCACCGGCGACGGTGCGAAGCATACAGATACGGGGATGACGGTCTGCGCGACGGACA 8312 |||| ||||| ||| ||| |||||||| | | | | | | || || || || || Sbjct 34288 TCATTGTCGGCGGCGGAGCGCAGCATACAAACCGGCGCTTTAGGTTCAGCACGGCGCACG 34347 Query 8313 GCCGCAAACACAAAGACAAATTCAGGGTGTGAGGGGGTAAGGGTTGTAGCCATGATGGCA 8372 || || |||| || ||||| |||||||| || ||| ||||||||||||||| ||||| Sbjct 34348 GCGGCGAACAGGAACGTAAATTTAGGGTGTGGGGTGGTGAGGGTTGTAGCCATGGTGGCA 34407 Query 8373 GCCTCCTGTGAATAGCAAATAACGCTATCGCCGGAGTTCTCACGCTCGATGGCGATAGCC 8432 |||||| ||| || || |||| | | |||||||||||||| || | ||||| Sbjct 34408 GCCTCCATTGAGTAATGGTTATTGCTACCACTTGAGTTCTCACGCTCTTGGGTGGTAGCC 34467 Query 8433 CAGACGGGGGTGAGAATACCGGCTTCACAGGATACCGGCCAGCCCGGAGGCTGCCCCGCC 8492 ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||| Sbjct 34468 CAGACGGGGGTGAGAATACCGGCCTCAATGAATACCGGCCAGCCCGAAGGCTGCCCCGCC 34527 Query 8493 TGAGCTACCATTGACTCTGCGGCATAATGAGCGGACGCGGGCAGGATGCACGGAATGCCA 8552 ||||| |||||| || | || ||| | |||| | || Sbjct 34528 TGAGCCACCATT---------GCTTGATAAGCACA-GCGGTTAAGA-------------- 34563 Query 8553 TCTGCACGACTGACCACACACCACACCATAATCTGGCGCTCTGTGGCATTGATTGCGACA 8612 || ||||| || |||| | || || || ||| | ||||| Sbjct 34564 ----AACCACTGAGCA----------GATAA-CAGGTGCGCTAAGGC------TACGACA 34602 Query 8613 CaaaaaaaGACGCGTGGCGCGTCATATGTCGCCTGTGAATTGCTCGGGTTCTCACGCCCG 8672 ||||||| |||| ||||||| | ||||||| ||| ||||||||||||||||||||| Sbjct 34603 TAAAAAAACACGCCAGGCGCGTGTTGTGTCGCCATTGAGTTGCTCGGGTTCTCACGCCCG 34662 Query 8673 GCTGCCGATTTTGCGGCAGGCGAAAAACTATA 8704 ||||||||||||||||||| |||||||||| Sbjct 34663 GCTGCCGATTTTGCGGCAGCACAAAAACTATA 34694 >seq223 Length=511576 Score = 174 bits (192), Expect = 1e-39 Identities = 230/318 (72%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 2701 CGGTTCATATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGC 2760 || |||| ||||| |||||| ||||||||||||| ||||| | ||||| ||| |||| Sbjct 274394 CGATTCACATCCAGATAATCCGCCCACCACTGCAGCATTAGCCTGCGCTCCCCCAGATGC 274453 Query 2761 TCGGAGGTATGGATATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTC 2820 |||| |||| |||||||||||||| ||| ||||| || ||| |||| |||| | Sbjct 274454 TCGGCCTTATGAATATATGCCGCACGCACAGAGTTACGTTCCTGGTGACTCATCTGCCGC 274513 Query 2821 TCTATCGCGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTA 2880 |||| ||| || | ||| || |||||||| || | || || ||||||||||| Sbjct 274514 TCTACCGCATCCTTCGACCACAATCCCGACTCAATTAATGAACTACATGCCATAGTCCTG 274573 Query 2881 AACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTT 2940 || |||||||| || ||||| | || ||||| |||||||| | | || || | || Sbjct 274574 AAACCATGCCCGCAAACCTCAATCTTCGTATCGTAGCCCATTACCCTCAGCGCCTTATTC 274633 Query 2941 ACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTCTTTA 3000 ||||| || |||||||| |||| || ||||||||| || || | |||||| | Sbjct 274634 ACCGTATTCTCACTCATCGGCTTACGTGGGTCATGATCGCCAACGAAGATCAGCTCACGA 274693 Query 3001 TCACCACTAATCTGCTTT 3018 | ||||| | |||||| Sbjct 274694 TTTCCACTCA--TGCTTT 274709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37052884657888