Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq742 311 1e-79 seq6691 134 2e-26 >seq742 Length=196864 Score = 311 bits (344), Expect = 1e-79 Identities = 1166/1808 (64%), Gaps = 39/1808 (2%) Strand=Plus/Minus Query 52847 TAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTG 52906 || |||||||| || || | || | |||| || || || || ||| || || || Sbjct 48873 TAATACATTCCAGTCTTCAAGCCCATCTTCCAGCCATAGAAGTGGATAGAAGTGAGCTTT 48814 Query 52907 GAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCC 52966 || | || ||||| | || || || | || |||||||| || || |||||||| Sbjct 48813 CCGTAGTTGGGCTCTGCCACGTGTATGTTGAAGGACTGACTTTGGTCAATAAAGGCTCCT 48754 Query 52967 CTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGG--AATTTCCCAAATAGTTTTATAAA 53024 | ||| || ||||| || || | || |||||| | ||||||||||| || || || | Sbjct 48753 CGGTCGGCTGCCATCTTGATCA--GTATTTTGTTGGAAATTTCCCAAACTGTCTTGTAGA 48696 Query 53025 C-TCGCTTAATATCTTCTGGAAGGTTTGTA--TTCTGAATAGATCCACCATCTACCATAA 53081 || || | ||| | | | | | || ||||| ||||| | | || | Sbjct 48695 GATCTCTGATGTGCTTGGGTATTCTGTCCAGGTTTTGAATGGATCCGTTGTTGGCAATGA 48636 Query 53082 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 53141 | ||| || || || || | ||| || | |||||| ||| | | || ||||| Sbjct 48635 TGAGATTTTTCATGTCGTCGTCCCACAAATCAGCCTCGGTCAAATCACGCAGTAGATGGT 48576 Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 |||| || || || |||||||||||||| || || | ||||| || || || | | Sbjct 48575 GATTCACAACCTGGAATTCTCCAGACAAGACCCTTCTGGTGTAGATGTTGGAAGTGAAGG 48516 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 |||| | || || || ||||| ||||| || || || || || || ||||| ||||| | Sbjct 48515 GTTCAAAGGATTCGTTGTTTCCTAAAATCTGGGCGGTGGAGGCGGTAGGCATGGGTGCGA 48456 Query 53262 CCAATAAACTATTTC-TAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTC 53320 || | | | ||| | | |||| | | ||| ||| |||| | | |||| ||| Sbjct 48455 G-AAGCAGCGAGTTCCTGACTCCGTGTATCGCGATCTTAGCTTTCAAGGCAGCCCAGTTC 48397 Query 53321 CAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTA 53379 || | ||| | || ||| ||||| || || ||| | | | Sbjct 48396 CACAAATCTGTAGGCTTCTTGTCCCACATCTCATATTGAAGAATCCCTTTGCTGACAGGA 48337 Query 53380 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 53439 | ||||| || || ||||||| || |||||||| || || || ||||| || || | Sbjct 48336 C-ATCCTGGGTACGTCTCGTATGTACCCTCCTTCTCGGCCAGCTCGCAACTTGCTTCCAG 48278 Query 53440 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 53499 ||||||||||| | || || || || | | ||| ||| || |||| || || Sbjct 48277 AGCACCGTAATACAATGTCTCAAATATTTGTTGATTCAGAAGCTGGGCTTTTTCACTCTC 48218 Query 53500 AAATGGATAAT----TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGA 53555 ||| || ||| |||||| || | || ||||| | ||||| | |||||||||| Sbjct 48217 AAAAGGC-AATCTCATTAAGACAAAA---GCATCTGCCAGGCCTTGTATTCCAATACCGA 48162 Query 53556 TAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 53615 | || | || | | | || || || ||||||||| | ||| ||| | |||| || | Sbjct 48161 TGGGGCGGTGACGCATGTTCGATGTTCTAGCTTCTGGTACAGGGTAAAAGTTAACGTCGA 48102 Query 53616 TAATTTTATTGAGGTTT---CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAAT 53672 ||||||| || | ||| ||||| | ||| || |||||| || ||| | Sbjct 48101 TAATTTTGTTCAAATTTTTAGTGACAGT---CTTGGTTACGATCTTCAGCTTTTCAAAGT 48045 Query 53673 CAAATTGTCCATCTAT-TACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 | ||| || ||| ||||||||| || | || ||||| |||| ||| || || ||| Sbjct 48044 CGAATACCTTAT-TATCTACAAACATATTGACAGCGATAGAGGCCAAATTGCAGACAGCT 47986 Query 53732 ACCTCA--TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGG 53789 || ||| || | | | |||| | ||| || ||||| || ||||| ||||| || | Sbjct 47985 ACTTCATCTTTGGA--AGTGTATTCAACTATTTCTGTGCAGAGGTTACTGCACTTAATAG 47928 Query 53790 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCG 53849 |||| | ||||||||| || |||||| ||| ||||| ||||| || || ||| | || | Sbjct 47927 TTCCCAGATTTTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGTACAGCATGTAGGGGG 47868 Query 53850 TACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAG 53909 | || ||||| | || ||||| || || || |||| | | ||||| || | Sbjct 47867 TTCCCGTTTCTACTTGAGATTCGATGATGGCCATCCACAAAGTCTGCGCCTTGATCTTCT 47808 Query 53910 ATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAA 53969 || | | ||| |||||| |||| |||| ||||| || |||||||| Sbjct 47807 TCTTAGAACGACCTTCGGCTTCGTAGCGTGTGTACAGAGCCTCAAATTCTTCTCCCCAGC 47748 Query 53970 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 54029 | || || || ||| || | || ||||| | ||| || ||| || | Sbjct 47747 ACTCGTGTAAGCCGGGAGCATCGTGGGGGCACATGAGACTCCAATCCTCGTTGCTCTCGA 47688 Query 54030 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGT 54088 | || ||||| || ||||| || ||||| | ||| || |||| || | | | | | Sbjct 47687 CACGCTTCATGAACAGATCGGGGATCCACA-AGCCGTAGAATAAGTCACGTGCACGAACT 47629 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| ||||| ||||||||||| | || | ||| | | || || | |||||||| Sbjct 47628 TCCTCCTTTCCAGTATTCTTTTTCAAGTCTAAGAATTCAAATATGTCCGCGTGCCACGGC 47569 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 || | ||| || | | | |||| |||| |||||||||||||| |||| || | || Sbjct 47568 TCAACGTAAATAGCGAAAGCTCCGGGCCTCTTGTTTCCTCCCTGGTCTACATAGCGGGCC 47509 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 |||||||| || || | || ||| || | | |||||||| | || || || || | | Sbjct 47508 GTGTTATTGTACACACGCAGCATGGGGACCAACCCATTGGAGACTCCGTTAGTACCCGCG 47449 Query 54269 ATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTT 54326 || ||| || |||| || || | | || ||| || || || || || || | Sbjct 47448 ATGTAGGAACCCTTGGCTCGGATGCAGT-GTACATGA-AGGCCGATACCTCCAGCAGACT 47391 Query 54327 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 54386 | || | | || || | || | || || ||||| || || ||||||||||| ||| Sbjct 47390 TGGAAACCAGGGCACACTGCTTCAGGGTGTCGTAGATCCCTTCAATACTATCATCGCTCA 47331 Query 54387 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 54446 || ||||| || || ||||| || |||| || | || |||| |||| Sbjct 47330 TGGCCAGTAGGAAGCAAGAAGACAGCTGAGGACGGGGCGTGGCTGCGGAGAATAGAGTAG 47271 Query 54447 GAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTA 54506 | ||||| || || |||| || || || || ||||| || || || ||||| || | Sbjct 47270 GGCTGGCGTGAGTGAAGTATTTCTCTGACAGAAGGTTGTAAGTTTCAATGGCTGAATCAA 47211 Query 54507 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 54566 | || || || || || | || | ||| | |||||| || |||||||| || | Sbjct 47210 TGTCTTCCCCGTGGATACCGACAGATACCCTCATGAGCATGTGTTGCGGTCTTTCTACAA 47151 Query 54567 TCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 54626 || | || ||||||| || || ||||| |||||||| ||||| ||||| | Sbjct 47150 CTTTCCCTTCGATCTTCAGCAGATATGAGCGCTCCAAGGTTTTAAATCCAAAGTAGTTAT 47091 Query 54627 A--TGAAA 54632 | ||||| Sbjct 47090 AATTGAAA 47083 >seq6691 Length=42033 Score = 134 bits (148), Expect = 2e-26 Identities = 277/410 (68%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 23970 TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 24029 || || ||||| || ||||| ||||| || || ||||| || | ||| | || Sbjct 14045 TCGGCCACAAATTCAATATACTGCGACATCAGGTCGCAGTTCATGCCCAGTAGTCTGACG 14104 Query 24030 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 24089 || || || | || ||||| ||||||||||| ||| || || | | |||| | Sbjct 14105 GGCAGGGCGTCGGTGAGAAACTCTTGTTCAATGATGACAGCATCCTTGACGATAGCTAGG 14164 Query 24090 ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 24149 ||| | | || ||| | | ||| ||||| ||||| | || || || |||||| Sbjct 14165 ACTCGTGCGGGGCTGGGTTTCTGTACTAAGTGTTTGAACATGAGGCAGGCAAAGTCGCAG 14224 Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 || ||||||||||||| || || |||||| || || | |||||||| |||||| Sbjct 14225 TGGAGACCCTCGTCTCGGGAGATCAACTCGTTGCTGAAGGTCAAGCCGGGCATGAGGCCA 14284 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 ||||| || |||||||| ||||| ||||| || || ||||| ||||||||||| Sbjct 14285 CGCTTCTTCAGCCAAAAGATGGAGGCAAAACTGCCGGAGAAGAAGATTCCTTCTACGCAA 14344 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC-ATG--TATCCACTTTTGAGCC 24326 || ||||| | | | || || | ||| |||| || ||||||| | ||| Sbjct 14345 GCGAAGGCCACCACACGCTCCCCGAAGGTGGCCGTGTCGCTGCCGATCCACTGCAGGGCC 14404 Query 24327 CAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 || || |||||||| || ||||| || | ||||| | ||| || || || Sbjct 14405 CAGTCTGCCTTCTTCTTCACACACGGTAGGGTCTCCACAGCGTTGAAAAG 14454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593210747092320