Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq223 199 3e-46 seq48539 95.1 1e-14 seq8056 93.3 4e-14 seq8521 82.4 7e-11 >seq223 Length=511576 Score = 199 bits (220), Expect = 3e-46 Identities = 343/498 (69%), Gaps = 0/498 (0%) Strand=Plus/Plus Query 105987 GCCCAACGACGGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTC 106046 ||||| || |||||| | || ||||||||||| ||||| || || || |||||||| Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532 Query 106047 AAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTC 106106 |||||| ||||| |||||| ||||| || ||||| |||| || |||| | || | Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGC 113592 Query 106107 AACATCGTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAAT 106166 ||| | ||| ||||| || |||||||| | |||||||| || || ||||| | ||| Sbjct 113593 CTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAAT 113652 Query 106167 TTTTAAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGG 106226 ||| | | || | ||| ||| |||||||| ||| |||||||| |||||||| || Sbjct 113653 TTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGG 113712 Query 106227 CTCGTTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAAT 106286 | | | || |||| || || | || || || ||||| |||||||| || Sbjct 113713 TGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTAT 113772 Query 106287 GGCAACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGG 106346 |||||||| ||||| | || ||| || | | |||||| | | ||| || || Sbjct 113773 CGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTC 113832 Query 106347 TATCGTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAA 106406 || |||| | |||||| || || || |||||||| || || |||| || ||||| Sbjct 113833 AATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAA 113892 Query 106407 CAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACC 106466 | |||| | || || || | ||| || |||| || ||| || ||||| || Sbjct 113893 GATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCC 113952 Query 106467 CCACTCAACAAAGTACGC 106484 |||||||||||| || || Sbjct 113953 CCACTCAACAAAATATGC 113970 >seq48539 Length=7100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| | ||||| ||||| ||||| || || || || ||| || Sbjct 6256 AACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCT 6315 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | | | ||| ||||||| || ||||||||| | || |||| Sbjct 6316 TCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGAT 6375 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || || || || || || ||||| || ||||||| | ||| | |||||||| Sbjct 6376 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTAC 6435 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || |||||||| || || ||| ||||| | || | |||||||| Sbjct 6436 AATATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || |||| || | || ||||||||||| ||| ||| |||||| | Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || ||||| || ||| || || ||||| | ||| |||||| Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | |||||||| || || ||| |||||||| || | | || ||||| Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| ||||| || || |||||| |||| Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGT 6923 >seq8056 Length=34938 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || || || || || || || ||| || Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| |||||| || |||||||| | || |||||| Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | |||||||| || || |||||| | |||||| || | || | ||||||||| Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTT--CCGATTACA 32080 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| |||||||| || || || || ||||| | || | |||||||| Sbjct 32081 ATATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129 >seq8521 Length=40141 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | ||| |||||| || || | |||||||| || || ||||| ||| Sbjct 1884 GACAAGGAAGGTATTCCCCCAGATCAGCAGAGGTTGATCTTTGCTGGTAAGCAACTTGAA 1943 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGT 29172 ||| || | || | | || ||||| ||||||||||||||||| |||||| |||| Sbjct 1944 GATGGTCGTACCCTCT--CTGACTACAACATTCAGAAGGAATCTACCCTTCACTTGGTCC 2001 Query 29173 TACGATTACGAGGAGG 29188 | || | |||||||| Sbjct 2002 TCCGTCTCCGAGGAGG 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427976662772270