Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq223 241 1e-58
seq4062 107 2e-18
seq19880 104 2e-17
seq48539 100 2e-16
seq8521 98.7 8e-16
seq7907 87.8 2e-12
>seq223
Length=511576
Score = 241 bits (266), Expect = 1e-58
Identities = 366/520 (70%), Gaps = 2/520 (0%)
Strand=Plus/Plus
Query 102531 CGCCGT--TGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTC 102588
|||||| |||| ||||||||||| | || ||||||||||| ||||| || || ||
Sbjct 113464 CGCCGTGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATC 113523
Query 102589 CACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCG 102648
||| ||||| || |||||||| |||| || ||||| || || | || || |||
Sbjct 113524 CACACCGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTC 113583
Query 102649 CCGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGA 102708
|||||| || || | |||||||||||||||||| |||| ||||||||| || |||||
Sbjct 113584 CCGCTTCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGA 113643
Query 102709 CGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCC 102768
|| | ||||||| | || | || || |||||||| ||| ||||| || ||
Sbjct 113644 AGGGACAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACC 113703
Query 102769 TTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACGG 102828
||| || || | || | ||||| | || ||| | || | || ||||| ||
Sbjct 113704 TTTATAAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGG 113763
Query 102829 GTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAA 102888
||||| || || || ||||| || || || || | ||| |||| || | |||
Sbjct 113764 ATCGTGTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAA 113823
Query 102889 ACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAA 102948
|||||| |||| | || | |||||| | |||||| |||||||||||||| ||||
Sbjct 113824 ACTGCCCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAA 113883
Query 102949 GCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGCCGCGGCC 103008
|||||||| | ||| | |||||| || || | ||| ||||| | || ||||| ||
Sbjct 113884 GCCGTACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACC 113943
Query 103009 GTACACGCCCCACTCTACGAAATACGCGGCCACGGTCTTG 103048
|||||||||||||| || ||||| ||| | ||| ||||
Sbjct 113944 ATACACGCCCCACTCAACAAAATATGCGCCAACGACCTTG 113983
>seq4062
Length=67394
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007
||| || || ||||| ||||||| || | ||||||||||| || ||||| |||||||
Sbjct 48391 TCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 48332
Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067
|| || | | || |||||||| ||||| || | || || ||||||||||| |||
Sbjct 48331 AAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 48272
Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127
| |||||||| || |||||| || || || ||| || ||| ||||||
Sbjct 48271 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCAC 48212
Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181
|| | ||| || |||||||| || | || || || || || ||||| ||||
Sbjct 48211 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATGAA 48158
>seq19880
Length=14982
Score = 104 bits (114), Expect = 2e-17
Identities = 92/114 (81%), Gaps = 1/114 (1%)
Strand=Plus/Minus
Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676
||||||| |||||| | | ||| |||| | ||||||||||||||||||||| ||||
Sbjct 7040 CCAATGACTCCGCAGGCTATGCGGGCGCCGGCATTGCCCGTGGTCTTGCTGAGTTCGTGC 6981
Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAAT 23730
|||| | ||| ||||||||| | |||| |||||| |||||| ||| |||||||
Sbjct 6980 CCGCCCACGCCGAGGTCATCGGGATCCGCGTGCACTACCAGGGTGC-GCCCAAT 6928
>seq48539
Length=7100
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || ||||| | ||| |||| || | || ||||||||||||||||| |||||||
Sbjct 6943 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCG 6884
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||||| | | || |||| || || || ||| | || | |||||||| || ||
Sbjct 6883 AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 6824
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||||||||||| ||||| || || | | | ||||| ||| ||
Sbjct 6823 GAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAA 6764
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| ||| ||||| ||||| || | || |||||||| || ||||||
Sbjct 6763 CTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714
>seq8521
Length=40141
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | |||||||||||| |||||||||||||| |
Sbjct 2245 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 2186
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || |||||||| || || || | || | |||||||| || |||
Sbjct 2185 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 2126
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| |||||| | | | || ||| ||||||
Sbjct 2125 ATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACC 2066
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || ||||||||||| | || || || || || |||||
Sbjct 2065 TCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || ||||| | ||| |||| || | || ||||| ||||| ||||| ||||| |
Sbjct 2931 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGG 2872
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||||| | | || |||| || || || ||| | || | |||||||| || ||
Sbjct 2871 AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 2812
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | |||||||| || |||||| |||||| | | | || || ||||||
Sbjct 2811 GGATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAA 2752
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| |||||||| ||||| | ||||||||||| || |||||
Sbjct 2751 CCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || || | ||| | ||||||||||| || ||||| ||||| |
Sbjct 2473 CCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2414
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | || || ||||| || || ||| | || | |||||||| || |||
Sbjct 2413 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 2354
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| ||| || || || | | | | | || ||| ||
Sbjct 2353 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACC 2294
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||||||||||||||||| || || |||||||| || |||||
Sbjct 2293 TCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247
>seq7907
Length=104607
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787
|||||| |||||||||||||||| ||| |||||||| | | ||||||| | ||||||
Sbjct 83867 CGGCGGAGTGGGGCTGAACCTGATCGGGGGCAACCATCTGCTGCTGCTGGACCTGCACTG 83808
Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCG 38847
||| || || | ||| |||||||| ||| | ||| |||| |||| |||| || |
Sbjct 83807 GAATCCACAGCTGGAGGCCCAGGCGCAGGACAGGATCTACCGGGTGGGGCAGATCAAACC 83748
Query 38848 CACGTACGTGTACAAG 38863
| | || | ||||||
Sbjct 83747 CGTGCACATTTACAAG 83732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421904960687144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |