Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq223 241 1e-58 seq4062 107 2e-18 seq19880 104 2e-17 seq48539 100 2e-16 seq8521 98.7 8e-16 seq7907 87.8 2e-12 >seq223 Length=511576 Score = 241 bits (266), Expect = 1e-58 Identities = 366/520 (70%), Gaps = 2/520 (0%) Strand=Plus/Plus Query 102531 CGCCGT--TGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTC 102588 |||||| |||| ||||||||||| | || ||||||||||| ||||| || || || Sbjct 113464 CGCCGTGCTGCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATC 113523 Query 102589 CACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCG 102648 ||| ||||| || |||||||| |||| || ||||| || || | || || ||| Sbjct 113524 CACACCGTCAAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTC 113583 Query 102649 CCGCTTGTCCGCGTCGTGCATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGGA 102708 |||||| || || | |||||||||||||||||| |||| ||||||||| || ||||| Sbjct 113584 CCGCTTCGCCTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGA 113643 Query 102709 CGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGCC 102768 || | ||||||| | || | || || |||||||| ||| ||||| || || Sbjct 113644 AGGGACAATTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACC 113703 Query 102769 TTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACGG 102828 ||| || || | || | ||||| | || ||| | || | || ||||| || Sbjct 113704 TTTATAAGGTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGG 113763 Query 102829 GTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAAA 102888 ||||| || || || ||||| || || || || | ||| |||| || | ||| Sbjct 113764 ATCGTGTATCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAA 113823 Query 102889 ACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGAA 102948 |||||| |||| | || | |||||| | |||||| |||||||||||||| |||| Sbjct 113824 ACTGCCCTCAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAA 113883 Query 102949 GCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAAAGCCGCGGCC 103008 |||||||| | ||| | |||||| || || | ||| ||||| | || ||||| || Sbjct 113884 GCCGTACAAGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACC 113943 Query 103009 GTACACGCCCCACTCTACGAAATACGCGGCCACGGTCTTG 103048 |||||||||||||| || ||||| ||| | ||| |||| Sbjct 113944 ATACACGCCCCACTCAACAAAATATGCGCCAACGACCTTG 113983 >seq4062 Length=67394 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || || ||||| ||||||| || | ||||||||||| || ||||| ||||||| Sbjct 48391 TCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 48332 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || | | || |||||||| ||||| || | || || ||||||||||| ||| Sbjct 48331 AAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 48272 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | |||||||| || |||||| || || || ||| || ||| |||||| Sbjct 48271 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCAC 48212 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | ||| || |||||||| || | || || || || || ||||| |||| Sbjct 48211 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATGAA 48158 >seq19880 Length=14982 Score = 104 bits (114), Expect = 2e-17 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||||| |||||| | | ||| |||| | ||||||||||||||||||||| |||| Sbjct 7040 CCAATGACTCCGCAGGCTATGCGGGCGCCGGCATTGCCCGTGGTCTTGCTGAGTTCGTGC 6981 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAAT 23730 |||| | ||| ||||||||| | |||| |||||| |||||| ||| ||||||| Sbjct 6980 CCGCCCACGCCGAGGTCATCGGGATCCGCGTGCACTACCAGGGTGC-GCCCAAT 6928 >seq48539 Length=7100 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| |||| || | || ||||||||||||||||| ||||||| Sbjct 6943 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCG 6884 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | || |||| || || || ||| | || | |||||||| || || Sbjct 6883 AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 6824 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||| || || | | | ||||| ||| || Sbjct 6823 GAATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAA 6764 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| ||| ||||| ||||| || | || |||||||| || |||||| Sbjct 6763 CTTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCATT 6714 >seq8521 Length=40141 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | |||||||||||| |||||||||||||| | Sbjct 2245 CCACCACGGAGACGGAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 2186 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||| || || || | || | |||||||| || ||| Sbjct 2185 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 2126 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| |||||| | | | || ||| |||||| Sbjct 2125 ATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACC 2066 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || || || || ||||| Sbjct 2065 TCTAGGGTGATTGTCTTGCCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||| |||| || | || ||||| ||||| ||||| ||||| | Sbjct 2931 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGG 2872 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | | || |||| || || || ||| | || | |||||||| || || Sbjct 2871 AAAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGG 2812 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||| || |||||| |||||| | | | || || |||||| Sbjct 2811 GGATACCTTCCTTATCCTGGATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAA 2752 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| | ||||||||||| || ||||| Sbjct 2751 CCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||| | ||||||||||| || ||||| ||||| | Sbjct 2473 CCACCACGCAGACGTAGGACAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAG 2414 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| || || ||| | || | |||||||| || ||| Sbjct 2413 AGAGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGG 2354 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||| || || || | | | | | || ||| || Sbjct 2353 ATACCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACC 2294 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||||||||| || || |||||||| || ||||| Sbjct 2293 TCCAGTGTAATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 2247 >seq7907 Length=104607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38728 CGGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTG 38787 |||||| |||||||||||||||| ||| |||||||| | | ||||||| | |||||| Sbjct 83867 CGGCGGAGTGGGGCTGAACCTGATCGGGGGCAACCATCTGCTGCTGCTGGACCTGCACTG 83808 Query 38788 GAACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAGAAAAAGCG 38847 ||| || || | ||| |||||||| ||| | ||| |||| |||| |||| || | Sbjct 83807 GAATCCACAGCTGGAGGCCCAGGCGCAGGACAGGATCTACCGGGTGGGGCAGATCAAACC 83748 Query 38848 CACGTACGTGTACAAG 38863 | | || | |||||| Sbjct 83747 CGTGCACATTTACAAG 83732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421904960687144