Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq223 214 1e-50
seq48539 104 2e-17
seq8056 93.3 3e-14
>seq223
Length=511576
Score = 214 bits (236), Expect = 1e-50
Identities = 346/498 (69%), Gaps = 0/498 (0%)
Strand=Plus/Plus
Query 97754 GCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAATCGACGTCGACACCATC 97813
|||||||| |||||| | || ||||||||||||||||| || | || ||||| ||
Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532
Query 97814 AAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACAAAAACGTTTCTTTTTTC 97873
||| || ||||| ||||| ||||| || ||||| |||| || |||| | || |
Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGC 113592
Query 97874 AACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCTCCTATTGAAGGAAGAAT 97933
|| | |||||||||||||||||| |||| |||||||| || || ||||| | |||
Sbjct 113593 CTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAAT 113652
Query 97934 TTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCAAAATTGCCTTTGTACGG 97993
||| || | ||| | ||| |||| |||||||| || |||||||| ||||| || ||
Sbjct 113653 TTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAGG 113712
Query 97994 TTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGGAT 98053
| | | | ||||| | || || | || || || ||||| |||||||| ||
Sbjct 113713 TGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTAT 113772
Query 98054 GGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGAGCTTCAAAACTTCCGGG 98113
|||||||| ||||| | || ||| || | ||||||| || | |||||| ||
Sbjct 113773 CGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTC 113832
Query 98114 TATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATGGGTATGAAACCGTACAA 98173
|| |||| | |||||| || || || || ||||| || || |||| ||||||||
Sbjct 113833 AATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAA 113892
Query 98174 CAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGCTGCGCCCGTACACACC 98233
| || | | || || || | ||| || |||| || | ||| || ||||| ||
Sbjct 113893 GATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACACGCC 113952
Query 98234 CCACTCGACAAAGTACGC 98251
|||||| ||||| || ||
Sbjct 113953 CCACTCAACAAAATATGC 113970
>seq48539
Length=7100
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091
|| ||||| || ||| | ||||| ||||| ||||| || || || || ||| ||
Sbjct 6256 AACATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCT 6315
Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151
| || ||| | | | | ||| ||||||| || ||||||||| | || ||||
Sbjct 6316 TCCGATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGAT 6375
Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211
|| || || || || || || ||||| || |||||||| | ||| | ||||||||
Sbjct 6376 CAGCAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTAC 6435
Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
||||| ||||||||||| || || ||| ||||| | || | ||||||||
Sbjct 6436 AATATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGG 6485
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093
|||||| || || |||| || | || ||||||||||| ||| ||| |||||| |
Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773
Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153
||| || | | || | ||| || ||| || || ||||| | ||| ||||||
Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833
Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213
|| || | |||||||| || || |||||||||||| || | | || |||||
Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893
Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGT 25243
||||||||||| || || |||||| ||||
Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGT 6923
>seq8056
Length=34938
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | ||||| ||||| || || || || || || || ||| ||
Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| ||| | | || | ||| |||||| || |||||||| | || ||||||
Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212
||| | |||||||| || || |||||||| |||||| || | || | |||||||||
Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTT--CCGATTACA 32080
Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261
|||| || ||||| || || || || ||||| | || | ||||||||
Sbjct 32081 ATATCCAGAAGGAGTCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGG 32129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410452176659276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |