Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6691 300 2e-76 seq223 208 8e-49 seq8056 122 9e-23 seq4062 118 1e-21 seq8521 107 2e-18 seq15643 105 7e-18 seq48539 84.2 2e-11 >seq6691 Length=42033 Score = 300 bits (332), Expect = 2e-76 Identities = 335/445 (75%), Gaps = 2/445 (0%) Strand=Plus/Minus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| | ||||| | ||||| || || ||||||| || ||||| |||| ||| Sbjct 14451 TTCAACGCTGTGGAGACCCTACCGTGTGTGAAGAAGAAGGCAGACTGGGCCCTGCAGTGG 14392 Query 117008 ATCGCCGGCAGAGA-GGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 |||| | || || | |||| ||||||| ||||| ||||||||||||| ||| || || Sbjct 14391 ATCGGCAGC-GACACGGCCACCTTCGGGGAGCGTGTGGTGGCCTTCGCTTGCGTAGAAGG 14333 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||| || |||||||| ||| |||| |||||||| ||||| || ||||||||||| Sbjct 14332 AATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTTGGCTGAAGAAGCGTGGCCTCATGCC 14273 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||| |||| |||||||||||| | |||||| | ||||||||||| || ||||||||||| Sbjct 14272 CGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAGACGAGGGTCTCCACTGCGACTTTGC 14213 Query 117187 CTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 ||| | ||||||| || || || ||| ||| ||| | || || ||| | ||||| Sbjct 14212 CTGCCTCATGTTCAAACACTTAGTACAGAAACCCAGCCCCGCACGAGTCCTAGCTATCGT 14153 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 || || || ||| ||| || || || |||||||| || ||||| || | || || Sbjct 14152 CAAGGATGCTGTCATCATTGAACAAGAGTTTCTCACCGACGCCCTGCCCGTCAGACTACT 14093 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 ||| | || ||||| ||||||||| || || || || || |||||| |||| || | Sbjct 14092 GGGCATGAACTGCGACCTGATGTCGCAGTATATTGAATTTGTGGCCGACCGGCTCTTGGT 14033 Query 117367 CGAGCTGGTCGGCGCCAAGCACTAC 117391 || |||| | | |||||||||||| Sbjct 14032 GGACCTGGGCTGTGCCAAGCACTAC 14008 >seq223 Length=511576 Score = 208 bits (230), Expect = 8e-49 Identities = 356/514 (69%), Gaps = 2/514 (0%) Strand=Plus/Plus Query 65521 GCCCAGCAGCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTC 65580 ||||||| |||||| | || ||||||||||| |||||||| | |||| ||||| Sbjct 113473 GCCCAGCGCCGGGTTTTCACCGCCACCGCCCGGAAATTCCCAGTCAATATCCACACCGTC 113532 Query 65581 GAACAGCTTCCACGTCTGCAGAAACTcgcgcgccgactcgacgaacgcgcggcgcg-cgc 65639 || | |||||| || ||||| || || |||| | ||||| || ||| ||| Sbjct 113533 AAAGAACTTCCAGGTTTGCAGGAATTCTTTTACCGAGGCTACGAAGACGTCCCGCTTCGC 113592 Query 65640 tcgcgTCGTGCATGTGATAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCA 65699 | || | |||| ||| ||||| || |||| |||||||| |||||||| || | | Sbjct 113593 -CTTATCCTTCATGAAATAGAACGGGTCTGACAACGTCCAGCCACCGATGGAAGGGACAA 113651 Query 65700 CGCGCAGGTGCGGGTGCGCCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACG 65759 ||||| || | || || || | ||||||||||| || || || || || || | Sbjct 113652 TTTTCAGGTTTGGATAGGCTTTTTTCAGCGCCATCAGCTGACCAAAATTACCTTTATAAG 113711 Query 65760 GCTCGCTCCACGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCA 65819 | | | | | ||||| | || ||| ||||||| || ||||| || ||||| | Sbjct 113712 GTGCTGAATATTCACTGACGCCTTGCTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTA 113771 Query 65820 CCGCCAGCTTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCG 65879 ||| | || || || | || ||||| || | ||| |||| |||| || |||||| Sbjct 113772 TCGCAACTTTAAAATCCTGACGCCCCGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCT 113831 Query 65880 CGATGGACTTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACA 65939 | ||| || | |||||||| || |||||||||||||| |||||| ||||||||||| Sbjct 113832 CAATGCTTTTTAAACTGTCGTTAATCCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACA 113891 Query 65940 GCAGATGCGTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGC 65999 | ||| || ||||| || | || | || || ||| || |||| || ||||||| Sbjct 113892 AGATATGTGTCAGGTTCTGCGCAGGGATTTTATCCACGGAGAATCCGCGACCATACACGC 113951 Query 66000 CCCACTCGACGAAGTAGGCGGCCACCACCTTGCC 66033 ||||||| || || || ||| | || |||||||| Sbjct 113952 CCCACTCAACAAAATATGCGCCAACGACCTTGCC 113985 >seq8056 Length=34938 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || |||||| | || |||||| || | Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| |||||| ||||||| || || || ||||||||| | || || Sbjct 32191 GATACTATTGAAAACG-TCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCA 32249 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 32250 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAA 32309 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| || | || || ||||| || ||||| Sbjct 32310 CATTCAGAAAGAATCTACCCTTCATCTTGTATTGCG 32345 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| | || || || || ||||| | || || || || | Sbjct 31903 ATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACGATCACATTGGAGGTTGAGCCCTCA 31962 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||||||| |||||||| || || || |||| || Sbjct 31963 GATACGATCGAAAATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAA 32022 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || ||||| | || || | |||||||| ||| ||||| Sbjct 32023 CAACGTCTTATCTTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAAT 32082 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || ||| | ||| Sbjct 32083 ATCCAGAAGGAGTCGACCCTCCATTTGGTG 32112 >seq4062 Length=67394 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| |||| || || | | Sbjct 48164 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGCCTTCT 48223 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || |||||| || || | || || || || |||||| | |||||| Sbjct 48224 GACACCATCGAACATGTCAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCCAGACCAG 48283 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| || | | || || ||||||||| Sbjct 48284 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCAGGACACTTTCGGACTACAAC 48343 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||||||| |||| || || || ||| || Sbjct 48344 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 48376 >seq8521 Length=40141 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||| || | || || ||| || | Sbjct 2247 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATTACACTGGAGGTTGAACCCTCG 2306 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||||| | | | |||||| ||||| | ||||| || || |||||| | || ||| Sbjct 2307 GACAGTATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCCCCAGATCAG 2366 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || ||||| || || | ||||| ||| |||||||||| Sbjct 2367 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAAGATGGCCGCACTCTCTCCGACTACAAC 2426 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || ||||| || Sbjct 2427 ATCCAGAAGGAGTCCACACTCCATCTTGT 2455 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || |||||| |||| || || || || Sbjct 2475 ATGCAGATCTTCGTCAAGACTCTGACTGGGAAGACAATCACCCTCGAGGTTGAGCCCTCC 2534 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| || || || ||| | || ||| Sbjct 2535 GACACCATAGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 2594 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| || || |||||||| || | || ||||| ||||||||| Sbjct 2595 CAGAGGTTGATCTTCGCCGGAAAGCAGCTGGAAGATGGACGTACCCTTTCTGACTACAAC 2654 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| | || || ||||| || Sbjct 2655 ATCCAGAAAGAGTCTACACTCCATCTCGT 2683 >seq15643 Length=27379 Score = 105 bits (116), Expect = 7e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || ||||| |||||||||||| | || || || || | Sbjct 12046 AATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTTGAGGTAGAGCCCTC 12105 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| |||| | || || | |||||||| || ||||| | || || Sbjct 12106 TGACACTATCGAAAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCTCCAGATCA 12165 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||| || |||||||| || || | || ||||| || ||||| Sbjct 12166 GCAGAGGTTGATCTTCGCCGGAAAACAGCTCGAGGATGGACGTACCCTTTCAGATTACAA 12225 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| |||| || || ||||| Sbjct 12226 TATCCAGAAGGAGTCCACACTTCACTTAGTG 12256 >seq48539 Length=7100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || ||||||||||||||| | || || ||| || | Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | |||| || |||| ||||| || || || ||| | || || Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || || || |||| || | || ||||| |||||||| Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| || |||||| | || || || Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCA 6917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514775892519840