Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq48539 109 8e-19 seq8056 109 8e-19 seq8521 95.1 2e-14 >seq48539 Length=7100 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| || || || || ||||| ||| |||| |||| | | Sbjct 6487 ATGCAGATCTTCGTAAAGACCCTTACCGGAAAGACTATTACTCTAGAAGTTGAGCCTTCT 6546 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| || || ||||| || ||||| || || || ||||| Sbjct 6547 GACACAATTGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATCCCTCCAGATCAG 6606 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || || |||||||| || || |||||| | || || | || || ||| Sbjct 6607 CAGAGGTTGATCTTCGCAGGAAAGCAGTTGGAGGATGGACGCACCCTTTCCGACTACAAT 6666 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 6667 ATCCAAAAAGAATCTACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 6716 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | ||||| || || |||||||| || || | || ||||| | Sbjct 6714 AATGCAGATTTTTGTCAAGACCCTTACTGGCAAAACCATCACCTTGGAAGTTGAACCCTC 6773 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || |||||||| || ||||| || || || ||||| Sbjct 6774 AGATACCATTGAAAATGTTAAGGCTAAGATTCAAGACAAGGAAGGAATTCCCCCAGATCA 6833 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||||||||| ||||| || ||| | || || | || || || Sbjct 6834 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCGGACTACAA 6893 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | || ||||| | ||| | || ||||| || Sbjct 6894 CATTCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 6944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || ||||| || |||||| | ||| | || | Sbjct 6259 ATGCAGATTTTCGTGAAAACCTTGACTGGCAAGACGATAACTTTGGAGGTGGAGCCTTCC 6318 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || ||||||||||| ||||||||||| || || ||||| Sbjct 6319 GATACGATTGAAAACGTGAAGGCAAAAATTCAAGACAAAGAAGGTATCCCTCCAGATCAG 6378 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||| || || || || || || || | ||||| | ||||| ||| Sbjct 6379 CAGAGGCTGATTTTCGCTGGCAAGCAGTTGGAAGACGGCCGAACCCTCTCCGATTACAAT 6438 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| ||||| || | || ||||| | ||| | ||||| || || Sbjct 6439 ATCCAAAAGGAATCCACCCTCCACTTGGTGCTCCGTCTCCGAGGAGGCAT 6488 >seq8056 Length=34938 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 124611 AATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT 124670 ||| |||| |||||||||||| |||||||| || || || ||||||||| | ||||| Sbjct 31975 AATGTAAAGGCGAAAATTCAAGACAAAGAAGGAATTCCTCCGGATCAACAACGTCTTATC 32034 Query 124671 TTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAA 124730 || || |||||||||||||| ||| |||| || | ||||| ||||| || || || Sbjct 32035 TTCGCTGGAAAACAATTAGAAGATGGTCGCACCCTTTCCGATTACAATATCCAGAAGGAG 32094 Query 124731 TCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || | |||||||| | ||| | ||||| || || Sbjct 32095 TCGACCCTCCATTTGGTGCTCCGTCTCCGAGGAGGCAT 32132 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||| |||| ||||| || || || | ||| | ||| | Sbjct 32131 ATGCAGATCTTCGTCAAGACATTAACTGGCAAGACAATCACCCTGGAGGTCGAACCCTCA 32190 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | || |||||||||||||| ||||| || || || ||||| Sbjct 32191 GATACTATTGAAAACGTCAAGGCCAAAATTCAAGATAAGGAAGGCATCCCCCCAGATCAG 32250 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || || || || | || ||| | || || | || || || Sbjct 32251 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGACGTACCCTCTCCGACTACAAC 32310 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || | ||| | || || ||| | ||||| ||||| Sbjct 32311 ATTCAGAAAGAATCTACCCTTCATCTTGTATTGCGTCTCCGAGGAGGTAT 32360 >seq8521 Length=40141 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || || ||||| |||| | Sbjct 2703 ATGCAGATCTTTGTCAAAACCCTGACCGGGAAGACCATCACCCTAGAGGTTGAGCCCTCA 2762 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| || || || ||||| |||||||| || || ||||| Sbjct 2763 GACACAATTGAGAATGTGAAAGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 2822 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||||||||| ||||| || ||| | || || | || || || Sbjct 2823 CAGAGGTTGATCTTTGCAGGAAAGCAATTGGAAGATGGACGTACCCTTTCCGACTACAAC 2882 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | || ||||| | ||| | || ||||| || Sbjct 2883 ATCCAAAAAGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGGAAT 2932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754805986771200