Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq223 185 8e-42 seq8056 129 5e-25 seq15643 125 6e-24 seq8521 109 5e-19 seq48539 105 6e-18 seq6691 89.7 4e-13 >seq223 Length=511576 Score = 185 bits (204), Expect = 8e-42 Identities = 331/480 (69%), Gaps = 5/480 (1%) Strand=Plus/Minus Query 21576 TGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGC 21635 ||||| | || ||||| || ||||| ||||| | ||| |||| || || | | Sbjct 113974 TGGCG-CATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAATCC 113916 Query 21636 CGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCA 21695 | |||| ||| || ||||||| | ||||||||| |||||| ||||| || ||||| | Sbjct 113915 CTGCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGA 113856 Query 21696 TCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGG 21755 | |||||| |||||| | ||||||||| |||| |||||||| | ||||||| Sbjct 113855 TTAACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGG 113796 Query 21756 GTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAA 21815 | || ||||| || || || ||||||||||| ||||| || | || | ||| || Sbjct 113795 GGCGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGC 113736 Query 21816 AGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGA 21875 | |||||| || | ||| || ||||| || |||||||| |||||||| ||| Sbjct 113735 AAGGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGA 113676 Query 21876 AGAGGGCCAATCCTCACATTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATC 21935 | | ||| |||| || | ||| | || | || ||||| || ||||| |||| || | Sbjct 113675 AAAAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACC 113616 Query 21936 CATTTTATCATATGCACG--ACGCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGA 21993 | || ||| ||| | | | | ||| | ||| || || | | || || |||| Sbjct 113615 CGTTCTATTTCATGAAGGATAAGGCGAAGCGGGAC--GTCTTCGTAGCCTCGGTAAAAGA 113558 Query 21994 ATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGG 22053 ||| |||| || |||||||||| |||||| || | || || ||||| ||||| ||||| Sbjct 113557 ATTCCTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq8056 Length=34938 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| |||| || ||||| || || || ||||||||| | ||||| ||| || Sbjct 32112 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGAAAGGGTGCGACCATCTTC 32053 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||||||||| |||| ||||| || ||||| ||||| || || || |||||| Sbjct 32052 TAATTGTTTTCCAGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCTTTGTCTTG 31993 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| || || | ||||| || || | | ||| ||||| | || | ||| || Sbjct 31992 AATTTTCGCCTTTACATTTTCGATCGTATCTGAGGGCTCAACCTCCAATGTGATCGTCTT 31933 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||| |||||| || |||||||||||| Sbjct 31932 TCCGGTCAAAGTTTTCACGAAAATCTGCATG 31902 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | | ||| || | || | ||||| ||||| ||||||||||| ||| Sbjct 32359 TACCTCCTCGGAGACGCAATACAAGATGAAGGGTAGATTCTTTCTGAATGTTGTAGTCGG 32300 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || ||||| || |||||| | || | | ||||||||| || | Sbjct 32299 AGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGG 32240 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| ||||| ||| |||||| || || | ||| | || || | | |||| Sbjct 32239 GGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTTTTCAATAGTATCTGAGGGTTCGA 32180 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| | ||| | || ||||| || | || || || || ||||||||| || Sbjct 32179 CCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGACGAAGATCTGCATGCCT 32127 >seq15643 Length=27379 Score = 125 bits (138), Expect = 6e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || | ||| ||||| | ||| ||||| || || || |||||||| | Sbjct 12274 ACCTCCTCGGAGTCGAAGCACTAAGTGAAGTGTGGACTCCTTCTGGATATTGTAATC--T 12217 Query 118571 CATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || | ||| |||||||||||||||||| ||| |||| | | ||||||||| ||| Sbjct 12216 GAAAGGGTACGTCCATCCTCGAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGA 12157 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || || || |||||| || || ||| || | ||||| ||||| | | ||| Sbjct 12156 GGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTTTCGATAGTGTCAGAGGGCTCT 12097 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | ||| | ||||| || || || || || || ||||||||||| Sbjct 12096 ACCTCAAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 12047 >seq8521 Length=40141 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||||||| || |||||||| || | || || ||| || ||||| Sbjct 2677 TGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGC 2618 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| | | ||||||||| || || || || ||||||||| || || Sbjct 2617 TTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTG 2558 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||||| | || | |||||| | | ||| ||||||| ||| | || || || ||| Sbjct 2557 GCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTC 2498 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || |||||||| Sbjct 2497 AGAGTCTTGACGAAGATCTGCAT 2475 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||||||||| |||||||| ||| | || || ||| || Sbjct 2911 ACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGAAAGGGTACGTCCATCTTCC 2852 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| | | ||||||||| || || || || ||||| || Sbjct 2851 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2792 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | ||||| | | ||| ||||| | ||| | || || Sbjct 2791 ATCTTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAACCTCTAGGGTGATGGTCTTC 2732 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| ||||| |||||||| Sbjct 2731 CCGGTCAGGGTTTTGACAAAGATCTGCAT 2703 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || |||||||| || || | || || ||| || Sbjct 2227 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGTCCATCTTCC 2168 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | | ||||||||| || || || || ||||| || Sbjct 2167 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGG 2108 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | ||||| | | ||| ||||| | ||| | || ||| Sbjct 2107 ATCTTGGCTTTCACATTCTCAATTGTGTCAGAGGGCTCAACCTCTAGGGTGATTGTCTTG 2048 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||||||||| Sbjct 2047 CCGGTAAGGGTCTTCACGAAAATCTGCAT 2019 >seq48539 Length=7100 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || || || ||||| || ||||||||| | || || || || Sbjct 6468 CACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTC 6409 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| | || || | ||||||||| ||||| || || || |||||| Sbjct 6408 CAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTG 6349 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||||| || || | ||| | || || | ||| ||||| | || | ||| || Sbjct 6348 AATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTT 6289 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| |||| ||||| || |||||||||||| Sbjct 6288 GCCAGTCAAGGTTTTCACGAAAATCTGCATG 6258 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| |||||||||||||| || | || || ||| || Sbjct 6923 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGAAAGGGTACGTCCATCTTCC 6864 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | || ||||| || |||| | | ||||||||| || || || || ||||||||| | Sbjct 6863 AATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGA 6804 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | ||| | ||| || | | || || || | ||| | |||||| Sbjct 6803 ATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAACTTCCAAGGTGATGGTTTTG 6744 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||||||||| Sbjct 6743 CCAGTAAGGGTCTTGACAAAAATCTGCAT 6715 >seq6691 Length=42033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 44862 TGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTTGCGGCGATATTTT 44921 |||| || ||||| || |||||| | ||||| || || |||||||| | || |||| Sbjct 14357 TGGTGGCCTTCGCTTGCGTAGAAGGAATCTTCTTCTCCGGCAGTTTTGCCTCCATCTTTT 14298 Query 44922 ACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAG 44981 |||| | || | |||||||| |||| || |||||||| ||||| || ||| Sbjct 14297 GGCTGAAGAAGCGTGGCCTCATGCCCGGCTTGACCTTCAGCAACGAGTTGATCTCCCGAG 14238 Query 44982 ACGAAGGTCTGCACACCAACTTTGCCTGCCTC 45013 |||| ||||| ||| | |||||||||||||| Sbjct 14237 ACGAGGGTCTCCACTGCGACTTTGCCTGCCTC 14206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433466453441128