Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq223 120 3e-22 seq11224 107 2e-18 seq7028 105 8e-18 seq205 102 9e-17 seq68679 96.9 4e-15 seq28704 96.9 4e-15 seq7379 93.3 5e-14 seq44093 91.5 2e-13 seq18295 91.5 2e-13 seq14541 91.5 2e-13 seq3490 91.5 2e-13 seq1417 91.5 2e-13 seq1397 89.7 6e-13 >seq223 Length=511576 Score = 120 bits (132), Expect = 3e-22 Identities = 312/476 (66%), Gaps = 0/476 (0%) Strand=Plus/Minus Query 96463 GGGGCTTATTTTGTAGAATGGGGCGTGTACGATCGTAAGTTTCCCGCGGACAAGGTGCCC 96522 || || |||||||| || ||||||||||| | ||| || ||| ||| || | || Sbjct 113973 GGCGCATATTTTGTTGAGTGGGGCGTGTATGGTCGCGGATTCTCCGTGGATAAAATCCCT 113914 Query 96523 ATTCCCAATCTGACGCATCTATTGTACGGTTTTATACCCATTTGCGGAGGCGACGGTATC 96582 | || ||||| ||| | |||||||| || | || |||||||| || ||||| || Sbjct 113913 GCGCAGAACCTGACACATATCTTGTACGGCTTCACGCCGATTTGCGGCGGGGACGGGATT 113854 Query 96583 AACGACAGTCTAAAACAGGTACCCGGCTCTTTTGAGGCTTTACAAAAATCATGTGCCGGC 96642 ||||||||| ||||| | ||| |||| |||| || ||| | ||||| || Sbjct 113853 AACGACAGTTTAAAAAGCATTGAGGGCAGTTTTCAGGCCTTGCAACGCGCCTGTGCGGGG 113794 Query 96643 AGAGACGATTTCAAGGTTAGCATCCACGACATTTACGGTGCTCTACAAAAACCGCAAAAA 96702 | | ||||| || ||| || ||||| | | ||| | || | || || || Sbjct 113793 CGTCAGGATTTTAAAGTTGCGATACACGATCCCTGGGCTGCGGTGCAGATGCCTCAGCAA 113734 Query 96703 GGTGTTTCCGAATACAATGAACCTTACCGTGGCAATTTTGGCCAGCTCATGGCTATTCGC 96762 || || ||||| | |||||| || |||||||| ||||| ||||| | Sbjct 113733 GGCGTCAGTGAATATTCAGCACCTTATAAAGGTAATTTTGGTCAGCTGATGGCGCTGAAA 113674 Query 96763 AAACATAACCCTCATTTAAAAATTTTGCCTAGCATCGGTGGTTGGACACTGAGCGACCCT 96822 ||| | || | | |||||| | ||| ||||||||| ||||| || ||||| Sbjct 113673 AAAGCCTATCCAAACCTGAAAATTGTCCCTTCCATCGGTGGCTGGACGTTGTCAGACCCG 113614 Query 96823 TTCTATTTTTTCGCCGACGACTATAAACGAAAAGTATTTGTGGACTCGGTTCGTGAATTC 96882 |||||||| | || | || || | || || || | |||||| |||||| Sbjct 113613 TTCTATTTCATGAAGGATAAGGCGAAGCGGGACGTCTTCGTAGCCTCGGTAAAAGAATTC 113554 Query 96883 TTGCAAGTGTGGAAGTTTTTCGATGGAGTAGACATCGACTGGGAGTTTCCCGGCGG 96938 ||||| |||||||| || || || || || || |||||||| ||||| ||||| Sbjct 113553 CTGCAAACCTGGAAGTTCTTTGACGGTGTGGATATTGACTGGGAATTTCCGGGCGG 113498 >seq11224 Length=41968 Score = 107 bits (118), Expect = 2e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 15869 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 15928 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 15929 TTACCACTATACTACCGAGGAT 15950 >seq7028 Length=60819 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 47122 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 47063 Query 60126 TACTACCGAGGAT 60138 ||||||||||||| Sbjct 47062 TACTACCGAGGAT 47050 >seq205 Length=216154 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||| |||| ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 118978 ATGCAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 118919 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| ||||| ||||||||||||| Sbjct 118918 TACTTACCACCATACTACCGAGGA 118895 >seq68679 Length=32626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 5845 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5788 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 5787 TTACCACTATACTACTGAAGAT 5766 >seq28704 Length=14463 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4008 AAAAATTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4065 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 4066 TTACCACTATACTACTGAAGAT 4087 >seq7379 Length=79682 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 |||| |||||| |||| | || ||||||||||||| ||||||||||||||||||||| Sbjct 41433 TTTA-GAAAAAAAATCTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 41491 Query 60111 ACATACTCACCACTATACTACCGAGGAT 60138 ||||| ||||||||||||| || ||| Sbjct 41492 GGATACTTACCACTATACTACTGAAGAT 41519 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 19880 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 19823 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 19822 TTACCACTATACTACTGAAGAT 19801 >seq44093 Length=3230 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1427 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1370 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 1369 TTACCACTATACTACTGAAGAT 1348 >seq18295 Length=21712 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 81 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 24 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 23 TTACCACTATACTACTGAAGAT 2 >seq14541 Length=24660 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 6681 AAAAACTCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 6738 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 6739 TTACCACTATACTACTGAAGAT 6760 >seq3490 Length=70237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 44534 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 44591 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 44592 TTACCACTATACTACTGAAGAT 44613 Score = 89.7 bits (98), Expect = 6e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 42756 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACT 42815 Query 60133 GAGGATT 60139 || |||| Sbjct 42816 GAAGATT 42822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 42983 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACT 43042 Query 60133 GAGGAT 60138 || ||| Sbjct 43043 GAAGAT 43048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACC 60132 || ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 50890 GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTACT 50831 Query 60133 GAGGAT 60138 || ||| Sbjct 50830 GAAGAT 50825 >seq1417 Length=110962 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 65782 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 65725 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 65724 TTACCACTATACTACTGAAGAT 65703 >seq1397 Length=119430 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || ||||||||||||| ||||||||||||||||||||| |||| Sbjct 31253 AAAAAATCTCTCCA--GCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 31310 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||| || || Sbjct 31311 TTACCACTATACTACTGAAGA 31331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| || || |||||||||| ||||||||||||||||||||| |||| Sbjct 7946 AAAAAATCTCTCCA--GCGGGAAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 7889 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| || ||| Sbjct 7888 TTACCACTATACTACTGAAGAT 7867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571325593841520