Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_002371.2
Length=41724
Score E
Sequences producing significant alignments: (Bits) Value
seq6760 279 1e-70
seq725 273 6e-69
>seq6760
Length=71796
Score = 279 bits (308), Expect = 1e-70
Identities = 360/497 (72%), Gaps = 0/497 (0%)
Strand=Plus/Plus
Query 19762 TGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAAT 19821
|||||||| || || ||||| || || || || || || || | || || ||||| |
Sbjct 16337 TGTTTGGTCTCGATATAAATCCTTCCGATGTACTCACCTAGCACGCCAATACCTATTAGC 16396
Query 19822 TGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT 19881
|| | ||||| |||||||||| |||||| | | |||||| || ||| |||| ||
Sbjct 16397 TGGATTCCACCGAGGAAAAGAATAGAAACCAAGATAGACGGATAACCATGAACGGGGTTG 16456
Query 19882 CCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATA 19941
||||| || | | ||||||||||| || ||||||| ||| |||| ||| || | |
Sbjct 16457 CCAAAAATGAGGGTGTCAATAATCATATATACACCGTAGGCGAAAGACAGACCGGCCACA 16516
Query 19942 AACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCC 20001
|| | || || || ||||| || || || ||||| |||||||| || ||||| || ||
Sbjct 16517 AAAAGACCTATATACGTCCACATTCGCAGTGGAAAAGTTGAGAACGATGTTATGCCTTCG 16576
Query 20002 AGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCA 20061
|| || |||||||| | |||||| || || ||||| | |||||| |||||||| |
Sbjct 16577 AGAGCAAGGTTCCACAGTTTCCAACCATTAAATTTTGTCGAACCGGCAACGCGTTCATCT 16636
Query 20062 CGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAAC 20121
|||| ||||| ||||| || || || || |||||| || || || ||||| ||
Sbjct 16637 CGGGTATATTCGACAACTTCAGTGCGACCACCGACCCAAGACAGAACCCCTTTCATGAAT 16696
Query 20122 AAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAG 20181
||||| ||||| || | || ||||| || || || || || |||||||| ||
Sbjct 16697 AAGTTTCGTTCAGGGAGCAACTTAATGTTTTCTACGACAGCGCGAGACATTAACCTGAAA 16756
Query 20182 TCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCAC 20241
|||||||| ||||| || || || || |||||||| | || || |||||||||||||||
Sbjct 16757 TCGCCAACGTTTTCCTCAATCTTAGGCTTGCTGATCATGTTATGGAGCTTATAAAACCAC 16816
Query 20242 TCAGCTGTCTTACGCTT 20258
||||| | ||||||||
Sbjct 16817 TCAGCGCTTTTACGCTT 16833
>seq725
Length=236385
Score = 273 bits (302), Expect = 6e-69
Identities = 555/820 (68%), Gaps = 28/820 (3%)
Strand=Plus/Plus
Query 33780 CGTCTGAGGAACGGAGAAGAGTCGGATACCCTGAAGACCGGAATCGAAGAGCTTGACGCT 33839
||||| | ||||| || |||||||| || || || ||||| || ||||| ||||
Sbjct 188784 CGTCTTAAAAACGGTGAGGAGTCGGACACGCTTAAAACCGGCATACCTGAGCTGGACGAA 188843
Query 33840 ATCACCGGAGGGATGAACGCAGAAGACCTTGTGATTATTGCTGCTCGTCCAGGTATGGGT 33899
|| || || || ||||| || || || | || | |||||||| || ||||||||
Sbjct 188844 ATTACAGGCGGACTGAACAACGAGGATCTGATCATCGTAGCTGCTCGCCCTGGTATGGGG 188903
Query 33900 AAAACCGAACTGGCGCTGAAGATAGCCGAAGGCGTGGCAAGTCGTGTTATTCCTGGTTCT 33959
|||||||| | || |||| | || ||||| || || || ||||| || ||
Sbjct 188904 AAAACCGAGTTTGCTCTGACCGTGGCTGAAGGTGTTGCGGAAAGTACTATTC--GGATC- 188960
Query 33960 GGCG---------TCCGGCGCGGTGTGTTGATTTTCTCGATGGAAATGAGCGCCATTCAG 34010
|||| | | |||||| ||| |||||||| |||||||||||||| |||
Sbjct 188961 GGCGATGAGGTGTTGCCGCGCGGCGTGCTGATTTTCAGCATGGAAATGAGCGCTCAGCAG 189020
Query 34011 GTTGTTGAGAGAGGGATTGCCGGCGCAGGAATGATGTCGGTCAGTGTGCTGCGTAACCCG 34070
|| | || | | | || ||||| || ||| |||| || ||||| || ||
Sbjct 189021 GTCATAGAACGCCAGTTGGCTGGCGCCTCAAACATGCCGGTGTCTGCCCTGCGCAAACCT 189080
Query 34071 TCACGTATGGACGATGAAGGATGGGCGAGAGTTGCAAGCGGGATGAAG----TTGCTGGC 34126
||||||||| ||||||||| ||||| | | | | || || ||| | |||||
Sbjct 189081 TCACGTATGAACGATGAAGACTGGGCACGCATATCGATGGGCATTAAGCGTTTATCTGGC 189140
Query 34127 AGAGCTGGATGTGTGGGTAGTTGACGCATCGCGTTTGTCTGTCGAAGAAATCAGGTCCAT 34186
||| | |||||||| || || || ||| || | | || | ||| | | ||
Sbjct 189141 ----CTGCAGGTGTGGGTTGTCGATGCGTCGAAACTGACCATTGAGCAGATCCGCGCGAT 189196
Query 34187 TTCCGAACGCCACAAGCAGGAGCATCCTAATCTGTCACTGATTATGGCTGACTATCTCGG 34246
| | ||| | ||||| | | | | || ||||| || || || || || || || ||
Sbjct 189197 TGCGGAAAGGCACAAACGGAAATACCCAAATCTATCTCTCATCCTGTGCGATTACCTTGG 189256
Query 34247 GCTAATTGAGAAACCAAAAGCGGAACGTAATGACCTCGCCATAGCACATATCTCCGGTAG 34306
|| || || || || || ||||| || ||||| || || || || |||||||| |
Sbjct 189257 CCTGATCGAAAAGCCGCGTGCTGAACGAAACGACCTGGCGATCGCCCACATCTCCGGCGG 189316
Query 34307 CCTGAAAGCGATGGCGAAAGACCTGAAAACTCCAGTTATCTCCCTAAGCCAGCTCTCCCG 34366
| ||||| |||||||| |||||||| || ||||| || || || || ||||| |||||
Sbjct 189317 CATGAAACGCATGGCGAAGGACCTGAAGACGCCAGTGATGTCACTTAGTCAGCTGTCCCG 189376
Query 34367 CGATGTTGAGAAGCGGCCAAAC------AAGCGCCCGACAAACGCAGATTTGCGGGATTC 34420
||| || |||||||| ||||| || || ||| ||| | || |||| ||
Sbjct 189377 CGACGTGGAGAAGCGACCAAAGGGCCAGAAACGGCCGGTTAACTCTGACCTGCGCGACGG 189436
Query 34421 AGGAAGCATTGAACAGGACGCAGACTCAATCATCATGCTCTATCGGGAAGCGGTATATGA 34480
|| ||||| || |||||||| ||| || ||||| || || |||| ||| |||||
Sbjct 189437 GGGGAGCATCGAGCAGGACGCCGACGGGATTTATATGCTGTACCGCGAAGGGGTGTATGA 189496
Query 34481 -CGAGAACAGTAGCGCCGCGCCATTTGCTGAAATCATCGTGACGAAAAACCGTTTTGGCT 34539
| ||| || |||||||| || ||||||||||||||||| || ||||| |||||
Sbjct 189497 ACCCGAA-AGCCCTGCCGCGCCGTTCGCTGAAATCATCGTGACCAAGAACCGATTTGGTG 189555
Query 34540 CGCTTGGTACGGTTTACCAGCGGTTCTGCAACGGACACTT 34579
||| ||||| |||||||||| |||| ||||| |||||
Sbjct 189556 AGCTCGGTACCGTTTACCAGCAGTTCAAAAACGGGCACTT 189595
Score = 224 bits (248), Expect = 3e-54
Identities = 482/708 (68%), Gaps = 13/708 (2%)
Strand=Plus/Plus
Query 21924 CATTCATCAATCAACCTTTTTGCCTCGTGAGGCTCAAGCCAGCGGATACGCTTATTTTTC 21983
|||||||||| || | || || || | || || ||||| | || |||||||||||
Sbjct 173927 CATTCATCAACCAGGCGTTGCGCTTCATTTGGTTCGAGCCATCTGACGCGCTTATTTTTT 173986
Query 21984 GGCTGAGGAACTTTGATGATCGGAGCCTTATCCAGCATCTTCCATTCGCGTTCAGCAGCC 22043
| ||| || ||||| || | || || || |||||| ||||| || ||||| || ||
Sbjct 173987 GCCTGTGGGACTTTTATCACTGGCGCTTTCTCCAGCCATTTCCAATCTCGTTCTGCGGCG 174046
Query 22044 CGGAGGAGTGCCTTAATGAATGAAAGGTGAGTTGCTTTTGTAGCTACTGCTGCCGGCTTA 22103
|| || || | ||| || | | ||||| |||| || || ||| ||||| | |||
Sbjct 174047 CGCAGCAGCGACTTCATCAGGGCGAGGTGTTTTGCCTTGGTGGCTG-TGCTGAC--CTTC 174103
Query 22104 -GGCTTGAATACCGGAG-GCTGCT-TCCCATTCTTCCTGCAAGCTTCATCCATT-AACTT 22159
||| |||| | ||| | |||| ||||| |||| | || |||
Sbjct 174104 TGGCGCTCATACTTTGGCGCTTCGATCCCTCTCTTCGC-CAAGGACTGTGAATGCAACCG 174162
Query 22160 CCAGTTTTCCTCATGCCGCCGATTAGTTATCTTCTGGATGGCGGAGTAAATCTTCGTCTC 22219
||||||| | ||| || ||| || || ||| || | ||| || || | ||
Sbjct 174163 ATGGTTTTCCGCTGCCCGGCGGTTAACCATTTTGCTGATCGCCGTGTAGATTTTGGCTTC 174222
Query 22220 GGTAATATCCTTCAACTGCATTCCTGCAAAATGCTGGAGCCAGAATCCTATCCGACTCTT 22279
||||||||||||||||| || ||| |||||||| ||||||||||| ||||| || ||
Sbjct 174223 GGTAATATCCTTCAACTTCACCCCTTCAAAATGCATCAGCCAGAATCCCATCCGGCTTTT 174282
Query 22280 GTCATCATCCAGCGACTTCTTATGCGCCTTCTCCTCTAACCACCTGACACAGGCCCCCTC 22339
|||||||||||| || ||||| | ||| || || |||||||| | ||||||| | ||
Sbjct 174283 GTCATCATCCAGAGATTTCTTCTCAGCCCGTTCTTCCAACCACCTTAAACAGGCCTCTTC 174342
Query 22340 AAAAGTCATGTCAGGCGTCTCTCCTAATTTACTTACCCTCCATGCTTCTGCCTTCAGCTT 22399
|||||| | |||||| || || | || | ||| |||| || ||
Sbjct 174343 AAAAGTGACGTCAGGAAAATCGCCCAGCCGGTCTATTCGCCAGAGCTCTGATTTTCTTTT 174402
Query 22400 GTCATGAAGCT-CTGTGGCCTGCCTTTTGTCCTTTGTCCCAAGAGACTGCTTAAATCTTT 22458
||| || |||| |||| |||| ||| |||| | |||||||||||| | |||| |||||
Sbjct 174403 GTCGTGCAGCTCCTGT-GCCTCCCTCTTGTTCGCTGTCCCAAGAGATTCTTTAAGTCTTT 174461
Query 22459 TGCCGTTCGGCAATGTGAAACTGGCGTACCAGGTTTCACCTCTGCGGAATAGTGACATTT 22518
||| ||||| | ||| || ||||||||| | | |||||| ||||| | ||||| |
Sbjct 174462 GCCCGCCCGGCAGCGAGAAGCTCGCGTACCAGATGTTACCTCTACGGAAGATAGACATGT 174521
Query 22519 CAGTTCCTCTGTTATGTCATCACCCGCGCTCACCTGGACAGTATGCAGCGGAGATTGAAG 22578
|||||| ||| |||||| | ||||| |||||| | | ||| | ||
Sbjct 174522 TTTTTCCTCGAGCATG---TCACCCTCACTCACGGCGACAGTGTTGATCGGTTTATTCAG 174578
Query 22579 TGCCGCAATGCAGGCTTGTCGTGTGGTGAGGTAAGGGGATTTCGGTTT 22626
||| ||||| || ||||| || ||| || ||||||||| || |||||
Sbjct 174579 TGCGGCAATACATGCTTGCCGGGTGAAGATGTAAGGGGACTTTGGTTT 174626
Score = 158 bits (174), Expect = 3e-34
Identities = 152/195 (78%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 21386 GTGGGACATATTTGGGACAGAAGTACCAAAAATCGAGTCAATTTGTCGAGCATGTTCAGT 21445
|||||||| ||||||||||||| |||||||| | ||| || || || || || ||
Sbjct 175480 GTGGGACAGATTTGGGACAGAAACCCCAAAAATAGCGTCTATCTGCTTCGCGTGCTCCGT 175539
Query 21446 CAGGTGATTTGGTGCCAGATGAGCATATCGGCGAACCATTTCGATAGACTCCCAGCCACC 21505
| ||||| || |||||||| || ||||| || ||||| ||||| ||||||||||| ||
Sbjct 175540 TAAATGATTCGGCGCCAGATGCGCGTATCGCCGTACCATCTCGATCGACTCCCAGCCGCC 175599
Query 21506 CATTTCCTGCAATACCGAAATCGGAACGCCAGCCTGAACTAACCAACTTGCCCACGTGTG 21565
||||||||| | || || | ||| || || ||||||| | ||| |||||||| |||||
Sbjct 175600 CATTTCCTGAAGAACTGACAACGGGACACCGGCCTGAATCAGCCAGCTTGCCCATGTGTG 175659
Query 21566 CCTCAGGTCATGAAA 21580
|||||||| |||||
Sbjct 175660 TCTCAGGTCGTGAAA 175674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 133286162263288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |