Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01]
68,834 sequences; 1,345,859,447 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq4062 109 4e-19
seq8056 95.1 8e-15
seq48539 93.3 3e-14
seq8521 86.0 4e-12
>seq4062
Length=67394
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| ||||| ||||||||||||||||| | || || ||||| ||||||||||| ||
Sbjct 48391 TCCACCGCGAAGCCTCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGA 48332
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | | | || |||| ||||||||| ||||| || |||| ||||||||| |||
Sbjct 48331 AAGTGTCCTGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGG 48272
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||| || ||||| ||| | || | || | || | | || ||
Sbjct 48271 GATTCCTTCCTTATCTTGGATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCAC 48212
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || ||||| ||||| || ||||| |||||||||||
Sbjct 48211 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 48164
>seq8056
Length=34938
Score = 95.1 bits (104), Expect = 8e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||||||||| |||||||||||||| || ||| | || |||| ||||||||| |||||
Sbjct 32322 TTCTTTCTGAATGTTGTAGTCGGAGAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCGAA 32263
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
||| | || |||||| || ||| | || ||||| || || || ||| | |
Sbjct 32262 AATCAACCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGAATTTTGGCCTTGACGTT 32203
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377
| || | ||| | | |||||| |||| ||||| || ||||| || | || || ||
Sbjct 32202 TTCAATAGTATCTGAGGGTTCGACCTCCAGGGTGATTGTCTTGCCAGTTAATGTCTTGAC 32143
Query 34378 AAAGATCTGCAT 34389
|||||||||||
Sbjct 32142 GAAGATCTGCAT 32131
>seq48539
Length=7100
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
||||||| ||| | || ||| || || || ||||| ||||| || ||| ||||
Sbjct 6470 AGCACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCT 6411
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGGGCACGCTCTCCTTGT 34295
|||||||||||||| |||||||| |||| |||||| || || || || || || ||||
Sbjct 6410 TCCAACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATAC-CT-TCTTTGT 6353
Query 34296 CGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355
| || ||| ||| | | | |||| ||||| | || || |||| || || |
Sbjct 6352 CTTGAATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCG 6293
Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| ||||| || | |||||||| || ||||||||
Sbjct 6292 TCTTGCCAGTCAAGGTTTTCACGAAAATCTGCAT 6259
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || ||||| | || |||| ||| | || || || || ||||||||||| ||
Sbjct 6942 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTGTAGTCCGA 6883
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || ||||| ||||| ||||| || || | || |||||| || |||
Sbjct 6882 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 6823
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | |||||||| ||||| ||| | || | || | ||| | | ||| ||
Sbjct 6822 AATTCCTTCCTTGTCTTGAATCTTAGCCTTAACATTTTCAATGGTATCTGAGGGTTCAAC 6763
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||||||||||||| || || || || ||||| ||||||||
Sbjct 6762 TTCCAAGGTGATGGTTTTGCCAGTAAGGGTCTTGACAAAAATCTGCAT 6715
>seq8521
Length=40141
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| || ||||| | || || || || | ||| |||||||| ||||||||||| ||
Sbjct 2701 CCACCACGCAGACGAAGGACGAGATGGAGTGTAGACTCTTTCTGGATGTTGTAGTCAGAA 2642
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| | || |||| |||||| || ||||| || | || |||||| || |||
Sbjct 2641 AGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 2582
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | |||||||| ||||| ||| | || |||| | |||| | || ||
Sbjct 2581 ATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCTATGGTGTCGGAGGGCTCAACC 2522
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||| || || || || ||||| || || |||||||||||
Sbjct 2521 TCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 2475
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || ||||| | || |||| ||| | || ||||| || ||||||||||||||
Sbjct 2930 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCTTTTTGGATGTTGTAGTCGGA 2871
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || ||||| ||||| ||||| || || | || |||||| || |||
Sbjct 2870 AAGGGTACGTCCATCTTCCAATTGCTTTCCTGCAAAGATCAACCTCTGCTGATCTGGGGG 2811
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||| || ||| || ||||| | || | || | || | | || |
Sbjct 2810 GATACCTTCCTTATCCTGGATC-TTGGCTTTCACATTCTCAATTGTGTCTGAGGGCTCAA 2752
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | |||||||| || ||||| || ||||| ||||||||||||||
Sbjct 2751 CCTCTAGGGTGATGGTCTTCCCGGTCAGGGTTTTGACAAAGATCTGCAT 2703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322800970255040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |