Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2770 93.3 9e-14 seq742 93.3 9e-14 >seq2770 Length=73287 Score = 93.3 bits (102), Expect = 9e-14 Identities = 130/183 (71%), Gaps = 12/183 (7%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||| || || |||||||| || || ||||||||||||||| ||||||| |||||||| Sbjct 66318 CTGCCCCCCCTTCAAGCTGGTAATTCTGGACGAGGCGGACTCCATGACAAAGGACGCGCA 66377 Query 254261 GTCCGCCCTCCGCCGAACGAT------GGAGACGCACTCCGTTGTGACGCGTTTTTGCCT 254314 | | ||||| || || || || |||||||| ||| || || || ||||| Sbjct 66378 GGCAGCCCTGCGGCGCACCATGGAACGGGAGACGCGATCC------ACCCGCTTCTGCCT 66431 Query 254315 GGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCG 254374 || |||||||||||||| |||||| | || | | ||| ||| ||||||| || Sbjct 66432 CGTCTGCAACTACGTGTCTCGCATCATCCCTCCAATCACCAGTCGATGCTCCAAGTTCCG 66491 Query 254375 ATT 254377 || Sbjct 66492 CTT 66494 >seq742 Length=196864 Score = 93.3 bits (102), Expect = 9e-14 Identities = 395/618 (64%), Gaps = 17/618 (3%) Strand=Plus/Plus Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| || ||||| ||||| || ||||| || || || || || || | || || Sbjct 47098 CTTTGGATTTAAAACCTTGGAGCGCTCATATCTGCTGAAGATCGAAGGGAAAGTTGTAGA 47157 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 | || || |||||| | ||| | || ||||||| || ||| ||| ||||| || Sbjct 47158 AAGACCGCAACACATGCTCATGAGGGTATCTGTCGGTATCCACGGGGAAGACATTGATTC 47217 Query 248946 CGTGCTCGAGACGTACACCGGAATG--AGTGAACGCTGGATGACACATGCCACACCGACG 249003 | | || || |||| | || || ||| | | || || |||| || || Sbjct 47218 AGCCATTGAAACTTACAACCTTCTGTCAGAGAAA--TACTTCACTCACGCCAGCCCTACT 47275 Query 249004 CTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCAT 249059 || ||| ||| | || |||| ||||||| || ||||| || || ||||| Sbjct 47276 CTATTCTCCGCAGCCACGCCCCGTCC----TCAGCTGTCTTCTTGCTTCCTACTGGCCAT 47331 Query 249060 GCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAA 249119 | || || | | || || || || ||||| || || ||| || | |||| || Sbjct 47332 GAGCGATGATAGTATTGAAGGGATCTACGACACCCTGAAGCAGTGTGCCCTGGTTTCCAA 47391 Query 249120 ATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAA 249179 | || || || ||||| || || | ||||||||| |||||||| |||||| Sbjct 47392 GTCTGCTGGAGGTATCGGCCTTCATGTACACTGCATCCGAGCCAAGGGTTCCTACATCGC 47451 Query 249180 AGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC-CACCG 249238 ||||| || || ||| |||| | || ||| | || || || | | | ||| | Sbjct 47452 GGGTACTAACGGAGTCTCCAATGGGTTGGTCCCCATGCTGCG-TGTGTACAATAACACGG 47510 Query 249239 CCAGGTTCATCAACCAGGCCGGGCGCCGAAAG---GGGTCGTTCGCCATGTATTTGGAAG 249295 || | | | |||||| || | | | || | ||||| || || | || Sbjct 47511 CCCGCTATGTAGACCAGGGAGGAAACAAGAGGCCCGGAGCTTTCGCTATTTACGTTGAGC 47570 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 ||||||||| || ||||| || ||| | |||||||||||||| | || || ||| Sbjct 47571 CGTGGCACGCGGACATATTTGAATTCTTAGACTTGAAAAAGAATACTGGAAAGGAGGAAG 47630 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCA 249415 | | || |||||| | ||||||||| ||||| || |||| |||||||| || ||| Sbjct 47631 TTCGTGCACGTGACTTATTCTACGGCTTGTGGATCCCCGATCTGTTCATGAAGCGTGTCG 47690 Query 249416 AGGCCGACGGCGATTGGA 249433 || | ||| ||||||| Sbjct 47691 AGAGCAACGAGGATTGGA 47708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1072819407158912