Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_002730.1 Length=38297 Score E Sequences producing significant alignments: (Bits) Value seq725 188 2e-43 >seq725 Length=236385 Score = 188 bits (208), Expect = 2e-43 Identities = 244/333 (73%), Gaps = 8/333 (2%) Strand=Plus/Plus Query 5174 CCCATTGGGGATTTAACAGTGTCTGCACCGTTGTTTTTTGTGGTGAAAAAGAACTGGTCA 5233 || || ||||||||||| | |||| |||| | || |||||||| | || | || Sbjct 182744 CCAATCGGGGATTTAACCGGATCTGAGCCGTCGGATTGGGTGGTGAAGTAATACCGACCA 182803 Query 5234 TCACGGGTAAGG---GTGCGAAGAACTATAGTAAACATGCCTTCGACAGTGATTTTCTCG 5290 || |||| | || | || ||||| | ||||||||||||||||||||||||||| Sbjct 182804 TCT---GTAACGCCCGTTCTCAGGGCTATACTGAACATGCCTTCGACAGTGATTTTCTCG 182860 Query 5291 TCCAGCATTTTGCCGATAGTTTTCATTTTCACGCGCCCCATAGGGGTTTCTTCGGTGTGT 5350 || ||||| |||||||| |||||||| || | ||| ||| || || ||||| ||||| Sbjct 182861 TCGAGCATCTTGCCGATGGTTTTCATCTTGATGCGGCCCTGCGGTGTCTCTTCCGTGTGA 182920 Query 5351 GCAAGAAAATAGACTCTCAGGTCATCAGGTGCATCCTGTGCAGCCTTAATCACCTCCCAT 5410 || || || || || |||| || || ||| |||| || || || || ||||| Sbjct 182921 GCCAGGAAGTAAACGATCAGCTCTTCTTCTGCCGCCTGGGCGGCGCGGATTACATCCCAG 182980 Query 5411 GCGTGGCGGCCTATCTCAGTAAATTTATCAAACGATTTTTCTTCTG-AGCGGCGCATAAA 5469 || || ||| ||||| |||||||| ||||| ||||| || ||| ||| |||||||| Sbjct 182981 GCACCGCCGCCAATCTCCGTAAATTTCTCAAAGGATTTCTC-GCTGCGGCGCCGCATAAA 183039 Query 5470 CTCATTGCTCATCACATACTGGAAGTCATCAAC 5502 || ||| | |||||| |||||||| |||||||| Sbjct 183040 CTGATTCCCCATCACGTACTGGAAATCATCAAC 183072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122328726239772