Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Limnephilus_20lunatus_20[genbank_20GCA_5F000648945.1_202014-05-01] 68,834 sequences; 1,345,859,447 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq223 122 7e-23 seq8521 114 1e-20 seq4062 100 2e-16 seq48539 91.5 1e-13 >seq223 Length=511576 Score = 122 bits (134), Expect = 7e-23 Identities = 319/480 (66%), Gaps = 5/480 (1%) Strand=Plus/Plus Query 6863 CCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACTTCCACGTCTCCAGAAAC 6922 || |||||||| ||||||||||||||||| ||||| || |||||||| || | ||| || Sbjct 113498 CCGCCCGGAAATTCCCAGTCAATATCCACACCGTCAAAGAACTTCCAGGTTTGCAGGAAT 113557 Query 6923 TCGCGCACGCTCTGC-ACAAACACCCGACGCTTGGCGGAGTCGTGCATCTTGTAGAAGGG 6981 || || | || || || || ||||| || || | ||| ||||| || Sbjct 113558 TCTTTTAC-CGAGGCTACGAAGACGTCCCGCTTCGCCTTATCCTTCATGAAATAGAACGG 113616 Query 6982 GTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTCAGATTGGGGTTGTGGTGTTT 7041 ||| | |||||| || || ||||| || | || |||| || || | | | ||| Sbjct 113617 GTCTGACAACGTCCAGCCACCGATGGAAGGGACAATTTTCAGGTTTGGATAGGCTTTTTT 113676 Query 7042 GATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTACGCCTCCACACCCTT 7101 | ||||||||||| ||||||||||| ||||| || | || | || || | Sbjct 113677 CAGCGCCATCAGCTGACCAAAATTACCTTTATAAGGTGCTGAATATTCACTGACGCCTTG 113736 Query 7102 TTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGAAATCGTCTCGGCC 7161 || || |||| || || |||| ||||||||| ||||| ||||| | || || Sbjct 113737 CTGAGGCATCTGCACCGCAGCCCAGGGATCGTGTATCGCAACTTTAAAATCCTGACGCCC 113796 Query 7162 CGCGCACGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGTTTCAAGGCGTCGTTGAG 7221 ||| || | | |||||| || | ||| ||| | ||| || |||||| | Sbjct 113797 CGCACAGGCGCGTTGCAAGGCCTGAAAACTGCCCTCAATGCTTTTTAAACTGTCGTTAAT 113856 Query 7222 TCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGAGATTGGGCACGGG 7281 ||||| || |||||||| ||| || ||||||| | ||| | || || || | || Sbjct 113857 CCCGTCCCCGCCGCAAATCGGCGTGAAGCCGTACAAGATATGTGTCAGGTTCTGCGCAGG 113916 Query 7282 CACCTTGTCTGCGG-GAAACTGCCGTCCGTACACACCCCACTCCACAAAGTACGCCGCCA 7340 | || || ||| ||| | | || || ||||| |||||||| ||||| || | ||||| Sbjct 113917 GATTTTATCCACGGAGAATCCG-CGACCATACACGCCCCACTCAACAAAATATG-CGCCA 113974 >seq8521 Length=40141 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || || ||| ||||||||| |||||||||||| || ||| | || || | Sbjct 2454 CAAGATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCATCTTCAA 2395 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || |||||||| || ||||||| ||| || || || || | ||| ||||||||| | Sbjct 2394 GCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGGGGATACCTTCCTTGTCCTGGA 2335 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 |||| ||| || | | | |||||| || ||||||| ||||| ||||||| Sbjct 2334 TTTTGGCCTTGACATTCTCAATACTGTCCGAGGGTTCAACCTCCAGTGTAATGGTCTTGC 2275 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| |||||| |||||||| ||||| Sbjct 2274 CGGTCAAAGTCTTGACAAAGATCTGCAT 2247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| ||||||||||| || || | || ||||| || ||||||||||| Sbjct 2666 CTCTTTCTGGATGTTGTAGTCAGAAAGGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAA 2607 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| || || || || | ||| |||||||| || || |||||| Sbjct 2606 GATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGGATCTTGGCCTTAACATT 2547 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| ||| ||||| | ||| || ||||| || ||||||||||| || Sbjct 2546 CTCTATGGTGTCGGAGGGCTCAACCTCGAGGGTGATTGTCTTCCCAGTCAGAGTCTTGAC 2487 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 2486 GAAGATCTGCAT 2475 >seq4062 Length=67394 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| ||||||||||| ||| | | || ||| Sbjct 48372 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGTGTCCTGCCATCTTCC 48313 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| || ||| ||||| || || | || ||||| || Sbjct 48312 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCTTGG 48253 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || |||||| Sbjct 48252 ATCTTGGCCTTGACATGTTCGATGGTGTCAGAAGGCTCCACCTCGAGGGTGATAGTCTTG 48193 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || |||||||| ||||| |||||| || Sbjct 48192 CCCGTGAGGGTCTTCACGAAGATCTGCATGATG 48160 >seq48539 Length=7100 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||| || || ||||| ||| || || |||| ||| Sbjct 6467 ACCAAGTGGAGGGTGGATTCCTTTTGGATATTGTAATCGGAGAGGGTTCGGCCGTCTTCC 6408 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| |||| || ||| || || ||||| | ||| || ||||| | Sbjct 6407 AACTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATACCTTCTTTGTCTTGA 6348 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 |||||| ||| || | | | || | ||||||||||| || ||||||||| Sbjct 6347 ATTTTTGCCTTCACGTTTTCAATCGTATCGGAAGGCTCCACCTCCAAAGTTATCGTCTTG 6288 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||| || ||||| || || ||||||||| Sbjct 6287 CCAGTCAAGGTTTTCACGAAAATCTGCATGTTG 6255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394743765735514